Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0280 ATGGCGAATCGTTGGTGGGCCGGGAATGTGGCTATGAGGCCAACGGACTCAATCTCATCATCACCATCACTTCAGCTGAGAAGAGAACAAGAATTTATGGACAACACCAACAATAACAACACCACTCCAACAAATAGCAGCAACAGCAACAACAACGAAGAAGAAGAGAGCCGAGACACAGGCGGCGACGCCGACCACAACCCCGCGGCTGAGCCCGGAAGCGGTGGAGGAGGAGGAGGAAACAGCGGCAGGAGGCCACGTGGCAGACCACCGGGGTCCAAGAACAAGCCAAAACCCCCAATAGTGATCACCAAAGAGAGCCCCAACGCGCTGCGGAGCCACGTGCTTGAAATCAGCAGCGGCAGCGACGTGGCTGAGAGCATAGCCGCCTTCGCTAACCGCCGCCACCGAGGGGTGTCGGTCCTCAGCGGGAGCGGCATTGTAGCCAACGTCACGCTCAGGCAACCGGCTGCCCCTGGTGGCGTCATAACACTACACGGGAGGTTCGAGATACTTTCCCTCAACGGTGCCTTCCTACCCGCCCCTTCGCCTCCAGGGGCAACGGGGTTGACTGTTTACCTAGCAGGCGGACAGGGGCAGGTAGTTGGTGGAACCGTTGTGGGATCTTTGGTTGCTTCAGGGCCTGTGATGGTGATTGCGGCAACTTTCGCTAATGCTACTTATGAGAGGTTGCCGCTTGCGGAGGATGAGCAAGGTGAAGAGGAAATGCAAGTGCAGCAACAGCAACAGCATTCGGGGGGAGTTAGTGGTGCTGGTGGTGGAAGTGGAACTACTCCTCAGGGTGGCGGTGGTGGTTCTCATTCTCAAGGTGGTTTGGGTGAGGGTTCGGTGGGAATGTACAATTTGCCTCCCAACTTGATGCACAATGGACAGATGCCCCCACATGATGTGTTCTGGGGGCCTCCACCTCGTCCTCCTCCTCCTTCTTTCTGA 954 0.5723 MANRWWAGNVAMRPTDSISSSPSLQLRREQEFMDNTNNNNTTPTNSSNSNNNEEEESRDTGGDADHNPAAEPGSGGGGGGNSGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEISSGSDVAESIAAFANRRHRGVSVLSGSGIVANVTLRQPAAPGGVITLHGRFEILSLNGAFLPAPSPPGATGLTVYLAGGQGQVVGGTVVGSLVASGPVMVIAATFANATYERLPLAEDEQGEEEMQVQQQQQHSGGVSGAGGGSGTTPQGGGGGSHSQGGLGEGSVGMYNLPPNLMHNGQMPPHDVFWGPPPRPPPPSF* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0280 317 ProSiteProfiles PPC domain profile profile. 108 246 IPR005175 -
Dod04g0280 317 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 315 IPR014476 GO:0003680
Dod04g0280 317 MobiDBLite consensus disorder prediction 303 317 - -
Dod04g0280 317 MobiDBLite consensus disorder prediction 243 272 - -
Dod04g0280 317 Pfam Plants and Prokaryotes Conserved (PCC) domain 112 224 IPR005175 -
Dod04g0280 317 Gene3D - 111 253 - -
Dod04g0280 317 MobiDBLite consensus disorder prediction 236 317 - -
Dod04g0280 317 CDD DUF296 112 195 IPR005175 -
Dod04g0280 317 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 315 - -
Dod04g0280 317 SUPERFAMILY AF0104/ALDC/Ptd012-like 108 236 - -
Dod04g0280 317 PIRSF ESCAROLA 19 316 IPR014476 GO:0003680
Dod04g0280 317 MobiDBLite consensus disorder prediction 1 108 - -
Dod04g0280 317 MobiDBLite consensus disorder prediction 13 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0280 Dod-Chr4 3447186 3449397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0280 1 314 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 54.030 2.19e-79 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0280 - - qsu:112039774 310.071