Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0267 ATGTCTTCGGGGACATCCTCGTATTGGTGCTACAGGTGCAGTCGGTTTGTTAGGGTATGGAGGCAGGACACGGTGGTCTGTCCCGACTGCGACGGCGGATTCATCGAGGAGATCGAGCCTCCGCCGCGCTCCGTCAACCTTGACGCCCGTCGCCGCCGCTTCCCCGCTGCAGCCATGTACATGATCGGCCAGCGCCACGGCGGCGGTCCTGAACAGACCTCCTCCCGACCCGCCGCACTCCGCCGAACCCGCCGCAACGGCGGTGACCGGTCACCCTTCAACCCTGTTATCGTCCTTCGCGGCGGCGGATCCTCGGAGTCCCAAGACGGTGGCGGAGGAGATTCCGGCCGAGGCTTCGAGCTCTTCTACGACGACGGCGCCGGTTCCGGCCTCAGACCTTTGCCTCCAAGCATGTCGGAGTTTCTCCTCGGATCCGGCTTCGATAGGCTTCTTGAACAGCTCTCTCAGATCGAGATCAACGGTATTGGAAGGTACGAGCACCCTCCAGCATCAAAAGCAGCCATTGATTCCTTACCAACAATAGAAATCGACCATACTCATTTAGCCCTTGAATCTCACTGTGCCGTTTGCAAGGAGCCCTTTGAGTTGGGAACTTCGGTGAGGGAAATGCCTTGTAAGCACATATACCACCAAGATTGCATATTGCCGTGGCTAGCACTTCACAACTCTTGCCCCGTTTGTCGCCATGAGTTGCCAGCTGATGCACCGGCAAACCCTACTGCTGGTGCTGGTGCTGCTGCTGCACTTTCAGGGCACTCGCTTGCTTTGAACGAGGACGAGAATGTTGGGTTGACCATTTGGAGGCTGCCAGGTGGAGGCTTTGCTGTTGGGAGATTCTCCGGTGGGAGGAGGGGTGCTGAGAGGGAGCTTCCTGTGGTTTACACTGAGATGGATGGTGGGTTCAATAATGGTGGGGAGCCTAGGAGGATCTCTTGGTCTTCTAGAGGTAGTAGAGGGAGGGAGAGTCGTGGGTTTCAAAGGTTTTTCAGGAACTTGTTTGGTTGCTTTAGAGGAGGAGGTGGTGGTGGTGGTGGTAGGGATGATGGACTTCATAGGTCTGATTCTAGTTCGGAGTCTCGGTTTGGAAGGGCAGGGTCTTCATACAGCATGGATCCCTCCCCACGCTCTCGTAGGACTTGGTCTATGGATGTAAACAGTGGAATGAGGGCATGGTAA 1197 0.5647 MSSGTSSYWCYRCSRFVRVWRQDTVVCPDCDGGFIEEIEPPPRSVNLDARRRRFPAAAMYMIGQRHGGGPEQTSSRPAALRRTRRNGGDRSPFNPVIVLRGGGSSESQDGGGGDSGRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDHTHLALESHCAVCKEPFELGTSVREMPCKHIYHQDCILPWLALHNSCPVCRHELPADAPANPTAGAGAAAALSGHSLALNEDENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGSRGRESRGFQRFFRNLFGCFRGGGGGGGGRDDGLHRSDSSSESRFGRAGSSYSMDPSPRSRRTWSMDVNSGMRAW* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0267 398 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
Dod04g0267 398 SUPERFAMILY RING/U-box 174 242 - -
Dod04g0267 398 MobiDBLite consensus disorder prediction 366 390 - -
Dod04g0267 398 MobiDBLite consensus disorder prediction 350 398 - -
Dod04g0267 398 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Dod04g0267 398 SMART ring_2 194 234 IPR001841 -
Dod04g0267 398 Pfam Ring finger domain 193 235 IPR001841 -
Dod04g0267 398 Pfam Protein of unknown function (DUF1117) 269 366 IPR010543 -
Dod04g0267 398 MobiDBLite consensus disorder prediction 64 118 - -
Dod04g0267 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 241 IPR013083 -
Dod04g0267 398 CDD RING-H2_RNF126_like 194 235 - -
Dod04g0267 398 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 341 - -
Dod04g0267 398 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0267 Dod-Chr4 3319045 3320241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0267 133 241 C3H Transcription Factor Family AT5G01980 42.202 2.12e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0267 - K11982 gmx:100807324 533.102