Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0239 ATGGACAGTACTCCTCATTCTCCTTCTTCTCCTTCTTCACCTTCCTCACCTTATTACTCTTCTTCCTCTGAAGGCCTCAGCCCTGACGGAAGCTTCGACGCCAACGAGCCGCGGACGCCGCTGGCCGTTCGGCGGGCCCTGCAGCTGCTGAACTCCGGCGAGCCCGACCTGCGGGTCCAGGCGGCCCGCGACATCCGTCGCCTCACCAAGACGTCGCACCGCTGTCGCCGACAGCTGTCCGAGGCTGTCGGCCCGCTCGTCTCCATGCTCCGAGTCGACTCGCCCGAGTCACACGAACCCGCTCTACTCGCCTTGCTCAACCTCGCCGTCAAAGATGAAAAGAACAAAATCAATATTGTGGAGGCTGGTGCATTGGAACCTATAATTAGTTTCCTCAAGTCACAAAATCTAAATCTGCAGGAGTCCGCAACTGCATCTTTGCTCACGCTGTCTGCCTCTTCAACCAACAAACCAATCATCAGTGCTTGTGGCTCCATTCCTCTTCTTCGTGGGCATCCTCAGAGATGGAACCCCACAAGCTAA 543 0.5672 MDSTPHSPSSPSSPSSPYYSSSSEGLSPDGSFDANEPRTPLAVRRALQLLNSGEPDLRVQAARDIRRLTKTSHRCRRQLSEAVGPLVSMLRVDSPESHEPALLALLNLAVKDEKNKINIVEAGALEPIISFLKSQNLNLQESATASLLTLSASSTNKPIISACGSIPLLRGHPQRWNPTS* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0239 180 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 32 169 - -
Dod04g0239 180 SUPERFAMILY ARM repeat 45 169 IPR016024 -
Dod04g0239 180 SMART arm_5 112 152 IPR000225 GO:0005515
Dod04g0239 180 SMART arm_5 69 110 IPR000225 GO:0005515
Dod04g0239 180 Gene3D - 41 178 IPR011989 -
Dod04g0239 180 MobiDBLite consensus disorder prediction 1 37 - -
Dod04g0239 180 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 123 165 IPR000225 GO:0005515
Dod04g0239 180 PANTHER U BOX DOMAIN-CONTAINING 32 169 - -
Dod04g0239 180 MobiDBLite consensus disorder prediction 1 29 - -
Dod04g0239 180 Pfam Armadillo/beta-catenin-like repeat 113 151 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0239 Dod-Chr4 2968125 2970677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0239 50 160 U-box Gene Family AT3G54790 38.053 9.71e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0239 - - gmx:100809684 247.284