Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0238 ATGGCACTGGCCAAAAACCAAATTCCTCATGATTCAAGCATGGGAAGCAAGGTTCAAAGTTGTGTTTTCAATGAAACTGCTGTGGAGATTACCTCATTGAGGGCTAATAATGGGGTCAATGAGTACCACCACAGATCTGTTCTAGAAGAGGAAGATGGCTCACAAAGCACTACTGGGTTCAGCAATGATTCAGCTATAACCCATTCTCCTCCACTATGTGGCAGTGGAAATGGTTATGTCTATAAGGGCACAAACTACCAACTTGAAGAAGAAGAATCTCTGATCAATTTCAAGGTCAGTGGAGGGTACAACAATGTCATGGAAGCTAGTGAATCTTTGCTTAGCTTTCAGCAGAACAGGCTGGTCCATAACAACAGTTACATGAAAGATAACACAAACAGTCACAAAGAATACTGTGTTTGGGAGAACAGTTTGCATCAGGGTTATAACCAGTGGAATCAGATTAGTCCAAGAAGCACTTCAGACATGAACCTGGTGCAGGATATCAGTTGCTTTCAAACTGCTAGTAGTAGCTATAGCTCCATAGTCAACAATGCAAAAGAGAAGCAACATGATGAAAGCTCATATGGGTGGCTCTATTCCGAGCAAACTGTTCCCGCTGATAGCCTCCAGGAATCATCAGGAACTCAAGAATCAGCCTTGAAAAGGCGCCCTTCTATGGCTGAGAACATGAAAGCTGCAAAGAAGCAATGCTCAACTGAGAGTAAAACTCCAAAACCTAAGTCAGGACCATCCAAGGATCCTCAAAGTGTGGCTGCCAAGAATAGAAGAGAGAGGATAAGTGAGCGGCTGAAGATACTACAAGAACTGGTGCCCAATGGCTCCAAGGTTGATTTGGTTACCATGCTGGAGAAAGCAATCAGTTATGTAAAGTTTCTTCAATTGCAAGTGAAGGTGTTGGCAACTGATGAATTTTGGCCTGTCCAAGGTGGAAAAGCTCCTGATATTTCTGAAGTGAAAGAAGCCATTGATGCCATTCTTTCATCCCAAAGGAACAGAAGTTCAAGCTCAAAGTAG 1038 0.4297 MALAKNQIPHDSSMGSKVQSCVFNETAVEITSLRANNGVNEYHHRSVLEEEDGSQSTTGFSNDSAITHSPPLCGSGNGYVYKGTNYQLEEEESLINFKVSGGYNNVMEASESLLSFQQNRLVHNNSYMKDNTNSHKEYCVWENSLHQGYNQWNQISPRSTSDMNLVQDISCFQTASSSYSSIVNNAKEKQHDESSYGWLYSEQTVPADSLQESSGTQESALKRRPSMAENMKAAKKQCSTESKTPKPKSGPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKAPDISEVKEAIDAILSSQRNRSSSSK* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0238 345 CDD bHLH_AtIND_like 252 314 - -
Dod04g0238 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 250 309 IPR036638 GO:0046983
Dod04g0238 345 MobiDBLite consensus disorder prediction 207 263 - -
Dod04g0238 345 MobiDBLite consensus disorder prediction 233 251 - -
Dod04g0238 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 251 300 IPR011598 GO:0046983
Dod04g0238 345 SMART finulus 257 306 IPR011598 GO:0046983
Dod04g0238 345 Gene3D - 248 308 IPR036638 GO:0046983
Dod04g0238 345 MobiDBLite consensus disorder prediction 207 223 - -
Dod04g0238 345 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 40 337 - -
Dod04g0238 345 MobiDBLite consensus disorder prediction 52 69 - -
Dod04g0238 345 Pfam Helix-loop-helix DNA-binding domain 261 301 IPR011598 GO:0046983
Dod04g0238 345 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 40 337 - -
Dod04g0238 345 MobiDBLite consensus disorder prediction 47 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0238 Dod-Chr4 2942286 2943828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0238 78 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 44.891 1.08e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod04g0238 HLH 1.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0238 - - gmx:100810010 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0238 04 2942286 2943828 Dod04g0238 04 2942286 2943828 ECH