Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0222 ATGGCTTCTTCCTTGGATATGTCACTTGATGATAGAATTAAGAACAGGAGTAACAGAGGGAGAGCTAGAGGACGTGGCAGAGCCCGCTTTGGCCGTGGACCAAGCGGGACTCTTGGTAATGGAAGGATGAGTGGTACTGGTAATGGTAGAAGAATGATGACTGCTGCTGTTAGTGGTGGAAGAATGACTGGTGCTGTTCGTAGAGGTCCTCTTATGGTTAATGCTCGGCCATCATCTTATGTTATTGCCAAGTCTATTCGCAGAACTAGGCCTTTTCCATGGCGGCATGATTTGTTTGAAGATAGCCTACGAGCTGCTGGTATACAAGGTGTTGAAGTCGGCACCAAGTTGTATGTGTCTAACTTGGACCATGGGGTAACCAATGAAGACATAAGGGAACTTTTCGCTGAGCTTGGAGAGTTGAAGCGCCATGCTGTTCATTATGATAAAAATGGACGTCAAAGTGGTTCAGCTGAAGTTGTCTATACTAGAAGAAGTGATGCATTTGCTGCCCTTAAGCGATATAATGATGTCCTTTTAGATGGAAAGCCTATGAAGATTGAGATTGTTGGTGCCAATGCAGAATTGCCTTTAACTGCTCGTGTAAATGTCACTGGAGTAAATGGGCAGAGGAAAAGGACAGTCGTAATGACGCCTAGAGGTGGTCGAGGTGGAGGTCCTGCTGTCCATAATCGTGGTGCTGGTTGGGGACAACAGGCTGGCTCAAGGAGTGGAGGTGGTGCTAGGACAGGCGGTGGGGCTAGGACAGGCGGTGGTGCTAGGACAGGCGGCGGTGCAAGGAGTGGGGGTGGGGCAAGGAGTGGAGGTGGACGCGGTCGTGGCCGTGGACGCAGCTGGGGTGGTGGCCGAGGTCGTGGGAAAAAGGAAGCCCTTGAGAAGTCAGCTGAGGAACTTGACAGTGAACTGGATACCTATCATGCTGAGGCCATGCAAATCTCATAA 963 0.5005 MASSLDMSLDDRIKNRSNRGRARGRGRARFGRGPSGTLGNGRMSGTGNGRRMMTAAVSGGRMTGAVRRGPLMVNARPSSYVIAKSIRRTRPFPWRHDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFAELGELKRHAVHYDKNGRQSGSAEVVYTRRSDAFAALKRYNDVLLDGKPMKIEIVGANAELPLTARVNVTGVNGQRKRTVVMTPRGGRGGGPAVHNRGAGWGQQAGSRSGGGARTGGGARTGGGARTGGGARSGGGARSGGGRGRGRGRSWGGGRGRGKKEALEKSAEELDSELDTYHAEAMQIS* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0222 320 Pfam C-terminal duplication domain of Friend of PRMT1 256 314 IPR025715 -
Dod04g0222 320 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 319 - -
Dod04g0222 320 SMART FoP_duplication_2 245 320 IPR025715 -
Dod04g0222 320 Coils Coil 295 315 - -
Dod04g0222 320 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
Dod04g0222 320 MobiDBLite consensus disorder prediction 289 309 - -
Dod04g0222 320 PANTHER THO COMPLEX SUBUNIT 4C 1 319 - -
Dod04g0222 320 SUPERFAMILY RNA-binding domain, RBD 109 189 IPR035979 GO:0003676
Dod04g0222 320 MobiDBLite consensus disorder prediction 216 309 - -
Dod04g0222 320 CDD RRM_THOC4 115 189 - -
Dod04g0222 320 SMART rrm1_1 116 188 IPR000504 GO:0003723
Dod04g0222 320 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 185 IPR000504 GO:0003723
Dod04g0222 320 MobiDBLite consensus disorder prediction 1 49 - -
Dod04g0222 320 Gene3D - 110 191 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0222 Dod-Chr4 2767467 2771546 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0222 114 189 Eukaryotic Initiation Factors Gene Family AT2G23350 39.474 1.29e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0222 K12881 - gmx:100801491 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0222 04 2767467 2771546 Dod04g0222 04 2767467 2771546 ECH