Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0219 ATGGGAAGGCAACCATGCTGTGACAAGGTTGGGTTGAAGAAGGGGCCATGGACTGCTGAGGAGGACAAGAAGCTCATCAACTTCATCCTCACTAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAGCTAGCAGGTCTATTGAGGTGTGGAAAAAGTTGCAGGCTTAGATGGACAAACTACCTGAGGCCAGACCTAAAGAGAGGCCTTCTATCAGAATATGAAGAGAAAATGGTCATTGATCTCCATGCTCAACTAGGCAACAGATGGTCTAAGATTGCTTCTCACCTCCCTGGAAGAACTGATAATGAGATCAAGAACCACTGGAACACACACATCAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTGTTACACACAAGCCACTATCTGGCACAACTGAACAAACTCAAACCAAACCTGAACAACCACTGCAAGAACAAGAACAACAACAACCACAACAACAATCTTTGCCAGTTGAGCAGGACCACAAACTTGAACCTGAAAATGAACAAACCAAGGAGCCAGAGAAGCCAGAGGCTTCATTTGAGTCATCAACCATCACTGAAGCCAAAGAGGAGGACCAAATCATGACGCCACTGTTTGACTCAATTGACCAAATGATGAATGGTTTCTGCACAGATGAAGTTCCAATAATAGCGCCTGATGAGATTCTTGCTCCATGTGACCCTTCAACTTCATCAACCAGCACATCATCATCATCATCATCATCTTCTTATTCTTCTTATTCAGATTCATCCAAATTCCTTGAAGACCTTCTGCTCTCAGATTTTGAGTGGCCTCAGAATAACAATTACAATGAAAATAATAATGTTAACAATAGCATCAACAACAACAATAATAGCGGTGTGGCCTTGTGGGATGATGACTTTATTAGCAGTTGGGATTTGCTTATCAATGATGATGATGGTGACAGAAAACAAGTATTTGATGCTACTCTCATTCAGTACCCAAGAATGATCACGGATTCAGAATCTTGGGCTTATGGGTTGTTTTGA 1017 0.4218 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLSGTTEQTQTKPEQPLQEQEQQQPQQQSLPVEQDHKLEPENEQTKEPEKPEASFESSTITEAKEEDQIMTPLFDSIDQMMNGFCTDEVPIIAPDEILAPCDPSTSSTSTSSSSSSSSYSSYSDSSKFLEDLLLSDFEWPQNNNYNENNNVNNSINNNNNSGVALWDDDFISSWDLLINDDDGDRKQVFDATLIQYPRMITDSESWAYGLF* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0219 338 SMART sant 66 114 IPR001005 -
Dod04g0219 338 SMART sant 13 63 IPR001005 -
Dod04g0219 338 Gene3D - 11 67 - -
Dod04g0219 338 MobiDBLite consensus disorder prediction 228 248 - -
Dod04g0219 338 CDD SANT 16 61 IPR001005 -
Dod04g0219 338 PANTHER MYB TRANSCRIPTION FACTOR 1 312 - -
Dod04g0219 338 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 312 - -
Dod04g0219 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod04g0219 338 MobiDBLite consensus disorder prediction 224 248 - -
Dod04g0219 338 Gene3D - 70 165 - -
Dod04g0219 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod04g0219 338 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Dod04g0219 338 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod04g0219 338 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod04g0219 338 CDD SANT 74 112 IPR001005 -
Dod04g0219 338 MobiDBLite consensus disorder prediction 128 160 - -
Dod04g0219 338 MobiDBLite consensus disorder prediction 117 194 - -
Dod04g0219 338 MobiDBLite consensus disorder prediction 161 194 - -
Dod04g0219 338 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod04g0219 338 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0219 Dod-Chr4 2730049 2732142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0219 1 338 MYB Transcription Factor Family AT5G16600 47.632 1.64e-101 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod04g0219 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0219 K09422 - gmx:100803624 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0219 04 2730049 2732142 Dod04g0219 04 2730049 2732142 ECH
Dod08g0838 08 10037908 10040407 Dod04g0219 04 2730049 2732142 PCT