Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0203 ATGGCAAGAAAGAAGGTGAAACTGGCATTCATAGTCAATGACTCAGCAAGGAAAGCAACATTCAAGAAAAGGAAGAAGGGTCTAATGAAGAAGGTTGGTGAACTTAGCACCCTTTGTGGTATTGATGTGTGCGCTATAGTTTATAGCCCCTATGATCCTCAGCCAGAGGTGTGGCCATCCCCATTGGGAGTCCAAAGGGTGCTTGCCAAGTTCAGGAGAATGCCTGAATTGGAGCAAAGCAAGAAGATGGTGAACCAAGAGAGCTTTCTTAGGCAGAGGATCCTCAAGGCCAAAGAGCAACTAAAGAAGCAGACAAAAGATAATAGAGAGAAGGAGATGATCCAGCTCATGTTTCAGTACCTTAGCGAAGGTAAAATCTTGCACAATATAAGCGTGGTTGATTTGAATGATCTGGCTTGGTTGATTGACCAGAATTTGAAGGGCGTCAATAGAAGGATTGAAGCATTGACCAAGAAGGCTCAGAGCCTGGCCCCAGTGGCAGCAGCACCAGTGTTGACTGATGAGGTAGCCAACATTGAAGAGAAGGAAAACGAGCAAGGGAGTGCTCATGGCCAGCGATTGGATATGAACATGGATTTCATGCAAAAGCAGCATTGGTTTATGAATTTGATGAATAGTACTGGCGTGGATGAGGCACATGCATCTGGAGATGTCGATCATCAAAGTGGCTTTTGGCCTAACCCATTTTTCCATTAA 717 0.4491 MARKKVKLAFIVNDSARKATFKKRKKGLMKKVGELSTLCGIDVCAIVYSPYDPQPEVWPSPLGVQRVLAKFRRMPELEQSKKMVNQESFLRQRILKAKEQLKKQTKDNREKEMIQLMFQYLSEGKILHNISVVDLNDLAWLIDQNLKGVNRRIEALTKKAQSLAPVAAAPVLTDEVANIEEKENEQGSAHGQRLDMNMDFMQKQHWFMNLMNSTGVDEAHASGDVDHQSGFWPNPFFH* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0203 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 206 - -
Dod04g0203 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod04g0203 238 Gene3D - 13 117 IPR036879 GO:0003677|GO:0046983
Dod04g0203 238 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 206 - -
Dod04g0203 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Dod04g0203 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod04g0203 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod04g0203 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod04g0203 238 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Dod04g0203 238 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Dod04g0203 238 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0203 Dod-Chr4 2508670 2509391 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0203 1 175 Type I MADS-box Gene Family AT5G48670 60.000 2.11e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dod04g0203 SRF-TF 1.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0203 - - gmx:100813231 367.081