Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0200 ATGAAACCAAACTTTGATCTTGAACTGGAGGCCTCAGCAGAATTTGAATCTGAAGCTAGCAGCCAGGTTGCTTCCAACATATCTGTCCATGAAACCTCTGCAGGTCCTTGTAGTGACAGCCTCACCAACTCTTCCAAAGTCACAAATCCAACAGAGATTCATCCCCATTCTGATGCTATCTCACTTGACTTAACTCTCAGCTTCAGCAACAATGAGTTAGGGGCAAGGGATTCAATAGGACTCTCATTCTCAAGCACTAGTGAGAGCAGCAATGAGCCTGCCTTTCAAACTACTGCAGCAACCACCCCAAGAGTTTTCTCTTGCAATTACTGCCAGCGCAAGTTTTTCAGCTCACAGGCTCTTGGTGGACACCAGAATGCACACAAGAGAGAACGAACCTTAGCGAAGCGAGCTATGCGGATGGGGTTGTTCTCTGAGAGATATGCCAGTCTAGCATCTCTCCCTCTACATGGTTCTTTCAGTTCCTTGGGAATCAAGGCACACTCTTCACTGCACCATGGCTTTGCACCAGCAATTAGGCCTCCTGAGATAAAAACCAATGCAAGATTTGATCAAGGATATGTCGGTCTCCCAATGTTCTTGGAGGATGATGAGGCAGAGCTGCTGTGGCCTGGTAGTTTCCGCCAGCTTACGGCCGAGGCAGGTGGTGCTCATCAGGATTTCATACTCACTGGAAGTTCAAGCTTGAGTTTTAGTGAGGTGAATCCACCGGTTGACATAGATAACTCGACACCTGAACTGGCACTGAAACTTTGA 777 0.4749 MKPNFDLELEASAEFESEASSQVASNISVHETSAGPCSDSLTNSSKVTNPTEIHPHSDAISLDLTLSFSNNELGARDSIGLSFSSTSESSNEPAFQTTAATTPRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGLFSERYASLASLPLHGSFSSLGIKAHSSLHHGFAPAIRPPEIKTNARFDQGYVGLPMFLEDDEAELLWPGSFRQLTAEAGGAHQDFILTGSSSLSFSEVNPPVDIDNSTPELALKL* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0200 258 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 258 - -
Dod04g0200 258 MobiDBLite consensus disorder prediction 31 54 - -
Dod04g0200 258 SUPERFAMILY beta-beta-alpha zinc fingers 102 133 IPR036236 -
Dod04g0200 258 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Dod04g0200 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Dod04g0200 258 Gene3D Classic Zinc Finger 84 152 - -
Dod04g0200 258 PANTHER ZINC FINGER PROTEIN JAGGED 1 258 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0200 Dod-Chr4 2483814 2487713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0200 1 258 C2H2 Transcription Factor Family AT1G66140 46.667 1.78e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod04g0200 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0200 - - gmx:100794851 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0200 04 2483814 2487713 Dod08g0861 08 10410339 10413111 PCT