Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0182 ATGACAATGGGAGAAGAGTCCTTAGCAGCAGTCCCACTTGACAGAGCTGTTGAACAGGCAATTGTATCTATAAAGAAAGGTGCATATTTACTTAAGTGTGGTCGTAGAGGAAAGCCCAAGCTCTGCCCTTTCAGACTTTCCCCGGATGAGAGAAATTTGATTTGGTACTCGGGGCAGCAGGAAAAACATTTGCGATTGAGTGCTGTGACAAATATTATTCAAGGCCAGGGAAATATAAGGTCCCAGAGGCAAAATGAACCCGAAAAGGAGTGCCATTCATTTTCGCTGATCTATGCTAATGGTGAACGCTCTCTTGATCTGATATGCAAGGACAAAGCACAAGCTACTTCTTGGTTTGTTGGCTTGAGAGCTGTGATTTCTAGGTGCCAGCATCCTAGACCTTTCAGTAATTTAAGAAGCTGCAAAGGGGTTCAGAGTTGTGTCAGTAGTCCTGCAGGAATATTACGAAGAAAGAAAAACCTTGGCCTTCTGGATGATACTTATCAATTCACTCAGGTACACAGCGTGTGTGCAAGTCCTACTTTGTCACTTTCAGAACGATGCTTTTCTGATGGCTTGTCATATACATCTGACAAATTTTATTCATCAACATCTTTCCCCTCCAGCACCCATGGCATAATTGATAATTCAGTCCCAAGTTCCCCTTATATTGATACGGCTATTCCGAGTAAGGTCGAATCAACACGCATTGACAAGGAGTGCAAGAATTTGTCTTGCAGGTCTCTGATGGCTCCTACATCCCCGCTTGTAGGAAATAACAATGTATTGAAGGATGTAATGGTATGGGGTGGAGGGATTGGAGGCCTTGTAGGGATTGTAAATGAAAGGTTTGTCAACCAACATGGGATTTATTCTTTAGTGCCAAAGTTACTGGAATCCACTATGATGTTAGATGTGCAAAATATAGCTTTAGGAGGAAAACATGCTGCCTTAGTAACAAAACAAGGGGAAGTGTTCTGCTGGGGTCAAGGGAAATGGGGAAGGCTGGGGCAAAAGATTGATATAGACATTAGCTCCCCCAAAATAGTTGATTCTCTTAATGGTATCCATATAAAACAAGTTGCCTGTGGTGAGTATCACACGTGTGCTTTGACAGGTTCTGGTGAAGTTTATACATGGGGGAATGATGTTTGTTGTGCAGATTTGGTAAATGAAGGGAGAATTAAAAGTCAGTGGATACCGCATAAACTTTCTGGTCCTTTAGATGGTATTAGTATCTCTAGTGTTGCTTGTGGAGAATGGCACACTGCAATTGTCTCTAGTTGCGGACGGTTATTTACATATGGAGATGGTACTTTTGGAGTTCTTGGGCATGGGGATCTTAGGAGCTATTCTCAACCAAAAGAAGTTGAATCTTTTCGTGGTCTAAGGGTGAGGTCTGTTGCTTGTGGATCATGGCATTCAGGTGCAATTGTTGAAGTCATGGCTGACCGTTTTCGGTATAATACTCCTAGCGGTAAGCTGTTTACATGGGGTGATGGAGATGAAGGGAGGCTTGGTCATGCTGATAATGGAAACAAGCTTGTACCAACATGTGTATCACAACTTGTTGACTATGACTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTGTAACACTTACTAATATGGGCAAAGTTTTTACAATGGGAAGTGCAAAACATGGACAGCTGGGAAATCCACATGCCAGGGATAAGGCAGTTGTGGTGGAAGGACAACTCAAACAAGAGTTTGTTAAAGTGATATCATGTGGTTCATATCATGTTGCTGTTTTGACTTCTGCTGGGAGTGTCTATACATGGGGAAAGGGTGAAAATGGACAGCTGGGGCTAGGTGACACTGAAGACAGATACACACCTTCGTTTGTTGACGCTCTAAGAGACAGGCAGGTAGATACTATCACTTGTGGACCAAGCTTCACATCCGCAATCTGTTTGCACAAACCCGTTTCTATCAGTGACCAGTCAGCTTGTAGTGGTTGTAGGTTGCCATTCGGGTTCACAAGGAAGAAGCATAACTGTTATGACTGTGGTCTTCTCTTTTGCCGCGCTTGCAGTAGTAAAAAGGTTATAAATGCAACTCTAGCGCCAAGTAAGAGCAAGGCCTTTCGGGTTTGTGATCAGTGCTTCGATAAACGGCAAGGAAGTACACATTCAGCAATGGCATCAAAGTCCAGGACCTACAACACTCAACAGCTACACAAACTTCCTGATTTGACTGAAGATAGAGGAGAAACAACTATGACACAAGGTCCCCTCTTGACTCTCGGTCAATCATGTTACAGGAAAAGCATGCCGAGTGGACGGAAGGACTGGAAGAACCAACAAGAAAGTCCGCAGCACTTAGAAGATAGTTCTTCTATGTTAGGTGGAATGCCACAATGGGGACAAGTTCCATGCCCTTCCTTATTCAAAATCAATTGTAAAGAAAATCCAGTTGTGCATGTTTCTTCATCAAAAAATAAAGTAGCTACTGTCTCACCACTGAGTTCAGAATCTACAGTGTCCAACTTCCCCAATGCTGAAACAGATACAACAAAGTCTGATAAGATGCTCATGGAAGAAGTTCAGAGGCTGAGAGCTGAGGCTAAGAGACTTGAAGAACAGTGTGAGCTCAAAAACCATAAAATACAGGAGTGTCAACAGAAAATAGAGGAGAGTTGGTTTGTGGCAAAGGAGGAAGCTGCTAAGTGCAAGGCAGCAAAAGAGGTCATAAAAGCTTTGGCTTTAAGGCTTCATACAATATCAGGAAAAGATAATGCTGGCCAAGAAGGAAAGGTTGCTGAATGTGTGCCTAATTTGACTCCCATACACACAGATATAATTAGCCCAAGAGATGGCAACATGGACAGTCTATCTAACTCCCCTATAGTATTCTCAGACACATTAAAATCAAAATTTGGGAGAAATATGTTCCTCAAGAATGAGTATGATAGGTTAACGGAGAATTCTTGCATCACCAAACCAGAATCTCAACAAGACAGCACCTTGGCCGCCGCCGCTGCCGCCACCGACACCGACAGTTTGAAGGTAGAATGGGTAGAACAGTATGAGCCTGGTGTTTACATCACATTCACAACCTTGCCTTGTGGGAAAAGGGGCCTTAAGCGAGTTAGATTTAGCCGGAAACGATTCTCGGAGAAGGAAGCCGAACGATGGTGGGAAGAGAATCAAGCCACAGTCTACCATAAGTATGAGATTGAAGGATACATACACACTGGCCAGAGTAGGGTGAAAGGGTAA 3243 0.4317 MTMGEESLAAVPLDRAVEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSPDERNLIWYSGQQEKHLRLSAVTNIIQGQGNIRSQRQNEPEKECHSFSLIYANGERSLDLICKDKAQATSWFVGLRAVISRCQHPRPFSNLRSCKGVQSCVSSPAGILRRKKNLGLLDDTYQFTQVHSVCASPTLSLSERCFSDGLSYTSDKFYSSTSFPSSTHGIIDNSVPSSPYIDTAIPSKVESTRIDKECKNLSCRSLMAPTSPLVGNNNVLKDVMVWGGGIGGLVGIVNERFVNQHGIYSLVPKLLESTMMLDVQNIALGGKHAALVTKQGEVFCWGQGKWGRLGQKIDIDISSPKIVDSLNGIHIKQVACGEYHTCALTGSGEVYTWGNDVCCADLVNEGRIKSQWIPHKLSGPLDGISISSVACGEWHTAIVSSCGRLFTYGDGTFGVLGHGDLRSYSQPKEVESFRGLRVRSVACGSWHSGAIVEVMADRFRYNTPSGKLFTWGDGDEGRLGHADNGNKLVPTCVSQLVDYDFVQVSCGRMLTVTLTNMGKVFTMGSAKHGQLGNPHARDKAVVVEGQLKQEFVKVISCGSYHVAVLTSAGSVYTWGKGENGQLGLGDTEDRYTPSFVDALRDRQVDTITCGPSFTSAICLHKPVSISDQSACSGCRLPFGFTRKKHNCYDCGLLFCRACSSKKVINATLAPSKSKAFRVCDQCFDKRQGSTHSAMASKSRTYNTQQLHKLPDLTEDRGETTMTQGPLLTLGQSCYRKSMPSGRKDWKNQQESPQHLEDSSSMLGGMPQWGQVPCPSLFKINCKENPVVHVSSSKNKVATVSPLSSESTVSNFPNAETDTTKSDKMLMEEVQRLRAEAKRLEEQCELKNHKIQECQQKIEESWFVAKEEAAKCKAAKEVIKALALRLHTISGKDNAGQEGKVAECVPNLTPIHTDIISPRDGNMDSLSNSPIVFSDTLKSKFGRNMFLKNEYDRLTENSCITKPESQQDSTLAAAAAATDTDSLKVEWVEQYEPGVYITFTTLPCGKRGLKRVRFSRKRFSEKEAERWWEENQATVYHKYEIEGYIHTGQSRVKG* 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0182 1080 Pfam Transcription factor regulating root and shoot growth via Pin3 1011 1065 IPR013591 -
Dod04g0182 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 596 647 IPR000408 -
Dod04g0182 1080 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 652 714 IPR017455 -
Dod04g0182 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 545 595 IPR000408 -
Dod04g0182 1080 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1068 - -
Dod04g0182 1080 Coils Coil 849 883 - -
Dod04g0182 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 596 644 IPR000408 -
Dod04g0182 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 492 540 IPR000408 -
Dod04g0182 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 374 425 IPR000408 -
Dod04g0182 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 323 371 IPR000408 -
Dod04g0182 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 545 592 IPR000408 -
Dod04g0182 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 430 478 IPR000408 -
Dod04g0182 1080 SUPERFAMILY PH domain-like 16 126 - -
Dod04g0182 1080 CDD FYVE_like_SF 657 710 - -
Dod04g0182 1080 SUPERFAMILY RCC1/BLIP-II 264 648 IPR009091 -
Dod04g0182 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 493 544 IPR000408 -
Dod04g0182 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 375 429 IPR000408 -
Dod04g0182 1080 SMART fyve_4 646 715 IPR000306 GO:0046872
Dod04g0182 1080 SUPERFAMILY FYVE/PHD zinc finger 652 730 IPR011011 -
Dod04g0182 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 264 322 IPR000408 -
Dod04g0182 1080 PRINTS Chromosome condensation regulator RCC1 signature 375 391 IPR000408 -
Dod04g0182 1080 PRINTS Chromosome condensation regulator RCC1 signature 534 552 IPR000408 -
Dod04g0182 1080 PRINTS Chromosome condensation regulator RCC1 signature 265 281 IPR000408 -
Dod04g0182 1080 PRINTS Chromosome condensation regulator RCC1 signature 416 432 IPR000408 -
Dod04g0182 1080 PRINTS Chromosome condensation regulator RCC1 signature 432 446 IPR000408 -
Dod04g0182 1080 PRINTS Chromosome condensation regulator RCC1 signature 591 612 IPR000408 -
Dod04g0182 1080 PRINTS Chromosome condensation regulator RCC1 signature 325 341 IPR000408 -
Dod04g0182 1080 MobiDBLite consensus disorder prediction 765 786 - -
Dod04g0182 1080 Pfam FYVE zinc finger 653 712 IPR000306 GO:0046872
Dod04g0182 1080 PANTHER F12P19.9 PROTEIN 16 1068 - -
Dod04g0182 1080 CDD PH_PLC_plant-like 15 127 - -
Dod04g0182 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 430 481 IPR000408 -
Dod04g0182 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 374 IPR000408 -
Dod04g0182 1080 ProSiteProfiles BRX domain profile. 1011 1066 IPR013591 -
Dod04g0182 1080 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 652 725 IPR013083 -
Dod04g0182 1080 Gene3D - 261 390 IPR009091 -
Dod04g0182 1080 Gene3D - 391 483 IPR009091 -
Dod04g0182 1080 Gene3D - 484 651 IPR009091 -
Dod04g0182 1080 Gene3D - 16 133 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0182 Dod-Chr4 2226473 2234355 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0182 1005 1070 Major Intrinsic Protein MIP AT1G31880 46.970 9.99e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0182 - - adu:107481014 1884.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0182 04 2226473 2234355 Dod04g0182 04 2226473 2234355 ECH