Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0180 ATGTCACTAGCAGTGTTCATCGTCACATTTACATTATGTGCCCTCAATTCACAATCCAACTCTCTCTATTCTTCTCCTTCACCTCCAGCAGCACCATTTGACCATTCTTCTTCTTCTTCTGACTACTCTTTTTCTTCCTCTTCTTATGTCGAGTGGCTGTCTGCACACGCCACCTCCTACACCGCCCCCGATTCCACCGACGCGCAGGGCGGCGCGTGCGGCTACGCAGACGGTTACGGTTACGGCGCCGCTGCCGCGGCTGGCCTCAGCGAGACGTTATTCGAGAGGGGGCAGATCTGCGGCGCGTGCTTTGAGCTCCGGTGCGCGGAGGAGGAGGCGCCATTCGACCGCCGGTGGTGCATCCCGGGCGCCTCCGTGATCGTTACTGCGACGGACTTCTGCGCCCCTAACTACGGGTTCTCGGCGGACGGGGAGAGCGGTGGCGGACGGTGCAACCCTCCGAGGCAGCACTTCGTGGTTCCGATTGAAGCGTTCGAGAAGATCGCGATCTGGAAGGGAGGGAACTTGCCCGTACAGTATCGCAGGATAAAGTGCAGAAGGGAAGGAGGAATCCGGTTCAAGATCACTGGCTCTGGTATCTTCATTTCAGTGCTGATCAGCAATGTGGCTGGGACTGGTGACATTGTTGCTGTCAAGGTTAAGGGTTCAAGAACTGGCTGGCTTCCTATGGATCGTAATTGGGGCCAAAACTGGCATGTCAACGCATTACTACAGAACCAACCTCTTTCATTTGAGGTCACTGACAGTGATGGGAAAACAGTTACATCTTACAATGTTGCTCCCAAGGACTGGACCTTTGGACAAACTTTTCAAGGCAAGCAATTTGAGTCTTGA 855 0.545 MSLAVFIVTFTLCALNSQSNSLYSSPSPPAAPFDHSSSSSDYSFSSSSYVEWLSAHATSYTAPDSTDAQGGACGYADGYGYGAAAAAGLSETLFERGQICGACFELRCAEEEAPFDRRWCIPGASVIVTATDFCAPNYGFSADGESGGGRCNPPRQHFVVPIEAFEKIAIWKGGNLPVQYRRIKCRREGGIRFKITGSGIFISVLISNVAGTGDIVAVKVKGSRTGWLPMDRNWGQNWHVNALLQNQPLSFEVTDSDGKTVTSYNVAPKDWTFGQTFQGKQFES* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0180 284 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 70 190 IPR007112 -
Dod04g0180 284 Gene3D - 36 186 IPR036908 -
Dod04g0180 284 Gene3D - 190 282 IPR036749 -
Dod04g0180 284 SMART dpbb_1 86 180 IPR007112 -
Dod04g0180 284 SUPERFAMILY Barwin-like endoglucanases 48 208 IPR036908 -
Dod04g0180 284 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 200 279 IPR007117 -
Dod04g0180 284 Pfam Lytic transglycolase 87 180 IPR009009 -
Dod04g0180 284 PANTHER EXPANSIN-A13 39 283 - -
Dod04g0180 284 SUPERFAMILY PHL pollen allergen 187 279 IPR036749 -
Dod04g0180 284 PRINTS Expansin/Lol pI family signature 90 108 IPR007118 GO:0005576
Dod04g0180 284 PRINTS Expansin/Lol pI family signature 265 279 IPR007118 GO:0005576
Dod04g0180 284 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Dod04g0180 284 PRINTS Expansin/Lol pI family signature 173 189 IPR007118 GO:0005576
Dod04g0180 284 PRINTS Expansin/Lol pI family signature 51 66 IPR007118 GO:0005576
Dod04g0180 284 Pfam Expansin C-terminal domain 191 268 IPR007117 -
Dod04g0180 284 PRINTS Expansin signature 236 257 IPR002963 GO:0009664
Dod04g0180 284 PRINTS Expansin signature 265 281 IPR002963 GO:0009664
Dod04g0180 284 PRINTS Expansin signature 189 201 IPR002963 GO:0009664
Dod04g0180 284 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Dod04g0180 284 PRINTS Expansin signature 78 92 IPR002963 GO:0009664
Dod04g0180 284 PANTHER EXPANSIN-A15 39 283 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0180 Dod-Chr4 2200226 2203239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0180 51 284 Expansin Gene Family AT3G03220 71.186 8.32e-122 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0180 - - adu:107481013 400.979