Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0179 ATGGCGATTCAGGATCAAAATGGACTTACTACATTACCGGAAGGTTCTCCAGTTGGAAATCAAGCAGTATCTTTGGGTTCTGGACTGCATCCTGTTACAAATGATCAGTTTTCTTGCACCAATGACTGTGCTCTAAAGGTAAGGAAACCATATACTATCACAAAGCAGAGAGAGAGATGGACAGATGAAGAACATAAGAAGTTCCTTGAGGCTTTAAAGCTGTATGGCCGGGCCTGGCGTCGCATTGAAGAACATGTTGGCACAAAGACTGCAGTTCAGATCAGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTAATTCGTGACTCTACTGGTAACATTACAGACTCCGCGGAATCAATTGAAATTCCTCCTCCAAGACCAAAACGGAAGCCAATGCATCCTTACCCCCGTAAGCTAGTGGAAACTCCTAATAAAGTAATTTCCATCAGGGACCAGCCAAAAAGGTCTAGTTCTCTGAAGTCACCAGATTTTGATCAAGAAAACCAATCTCCCAAATCAGTATTATCTGCAGTTGGATCAGACAGCCTTGGTTCCTCCGATTCTGGTACACCAAATGGAAGTTTATCCCCAATGTCATCGGTTACTGGCGTGCATTCAAGCGGTTTTGCTCTGCCTGAACCCAAAACACCGTCCGAGGAAGCTGGACTAAATGCTGATTCAGCTCATGATGAGCAACCTCTTATGAAATCTGAGAAAGAAAGTGTTTCTACCAAAGAAGACACAACAGAAGAATCATCTGGTCGAACTCTCAAGCTTTTTGGGATGACTCTATTGGTAACAGATACATGCGGCCCCTCTTGTCCAACAATTGAAGCATGCAAACCAGTACCTCTACACATAAATGTGCATTGCTTTAGCAAAGGTGAACGAAAATTGGAAGTTCCTGGCCACATTGCACCAAGTGAAACATTCGCCATATCGGAGATAAGGAGCGTGAGAGTGAGACCGGAAACATGTGGGAGAGGTTTTGTGCCATATAAAAGGCGCATTGCTGAGAGAGAAAACCAGTCTTCTGCGGATGATAGGGAAGAGCAACGCATCAGGCTTTCCTTGTAG 1077 0.441 MAIQDQNGLTTLPEGSPVGNQAVSLGSGLHPVTNDQFSCTNDCALKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVIRDSTGNITDSAESIEIPPPRPKRKPMHPYPRKLVETPNKVISIRDQPKRSSSLKSPDFDQENQSPKSVLSAVGSDSLGSSDSGTPNGSLSPMSSVTGVHSSGFALPEPKTPSEEAGLNADSAHDEQPLMKSEKESVSTKEDTTEESSGRTLKLFGMTLLVTDTCGPSCPTIEACKPVPLHINVHCFSKGERKLEVPGHIAPSETFAISEIRSVRVRPETCGRGFVPYKRRIAERENQSSADDREEQRIRLSL* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0179 358 MobiDBLite consensus disorder prediction 162 206 - -
Dod04g0179 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 106 IPR017930 -
Dod04g0179 358 MobiDBLite consensus disorder prediction 114 254 - -
Dod04g0179 358 SMART sant 56 104 IPR001005 -
Dod04g0179 358 ProSiteProfiles SANT domain profile. 55 106 IPR017884 -
Dod04g0179 358 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 55 104 IPR006447 GO:0003677
Dod04g0179 358 MobiDBLite consensus disorder prediction 231 253 - -
Dod04g0179 358 Gene3D - 59 106 - -
Dod04g0179 358 MobiDBLite consensus disorder prediction 1 23 - -
Dod04g0179 358 CDD SANT 59 102 IPR001005 -
Dod04g0179 358 PANTHER PROTEIN REVEILLE 7-RELATED 37 278 - -
Dod04g0179 358 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Dod04g0179 358 SUPERFAMILY Homeodomain-like 51 104 IPR009057 -
Dod04g0179 358 PANTHER SWI/SNF COMPLEX-RELATED 37 278 - -
Dod04g0179 358 Pfam Myb-like DNA-binding domain 57 100 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0179 Dod-Chr4 2195822 2199293 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dod04g0179 Myb_DNA-binding 7.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0179 - - gmx:780539 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0179 04 2195822 2199293 Dod04g0179 04 2195822 2199293 ECH