Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0159 ATGTCTCCACCACTGCTGGTTACTGAGGAGGAAGGGCAGAGCAACGCCTCAACCATAGCATCTGCATCTTCACCACAATCCTTGGACTGCTTCTCCCAAAATGGGGCGGCATTGAAAGAACGCTACTACCTTGGATTGTCTGATTCCTCATCAGTGGACAGTTCTACTGTCCCTAGCTCATCCGACAAGAAAAAGGACAACTTGAATTTTAAGGCCACAGAGTTGAGGCTGGGCCTTCCTGGATCCCAATCACCTGAAAGGGATTTCCCCGATGTTTTCTCATTGAGCTCAACAAAACTTGATGAGAAACCACTGTTCCCTTTGCTTCCTTCGAAAGATGGAATCTGCTCGATGTCCCAAAAGAATGTTGTTTCAGGCAACAAGAGAGGTTTTGCTGATGCAATGGATGGGTTCCCTGAGGGTAAGTTTCCTGGTACTACAGGGATAAATGTAATGCTATCACCTAGACCTTCCGCAGCTCAGCCAACCATGGCAAAAGAAATACCAAGCAAGGTATTACAAGAACGGCCTGGTGTGGCGAATGGAAATGCTCATAACCATACAGGTGCTTCTATCAGTGGCAGTGCACCAGCTTCTAAGACACAGGTTGTTGGTTGGCCTCCTATTAGATCATTTAGGAAAAACTCGTTGGCCACCACTTCAAAGAACAATGATGAAGTAGATGGAAAACCTGGTCCAGCCGCAATCTTTGTGAAGGTCAGCATGGACGGTGCTCCCTATCTGAGGAAGGTAGATCTAAGGAATCATACAACATACCAGGAACTGTCTTCTGCCCTTGAAAAGATGTTCAGCTGTTTTACATTAGGTCAGTGTGGTTCCCATGGGGCTCCGGGAAGAGAAATATTGAGTGAGAGCAAGCTGAAGGACCTCCTGCATGGTTCAGAATATGTAGTTACTTATGAAGATAAAGATGGTGACTGGATGCTTGTTGGAGATGTACCATGGGAGATGTTCATTGACACATGCAAGAGGCTGAAAATCATGAAGGGTTCTGATGCCATAGGCTTAGCTCCCAGGGCTATGGAAAAATCCAAGAGCAGGAGCTAG 1068 0.4644 MSPPLLVTEEEGQSNASTIASASSPQSLDCFSQNGAALKERYYLGLSDSSSVDSSTVPSSSDKKKDNLNFKATELRLGLPGSQSPERDFPDVFSLSSTKLDEKPLFPLLPSKDGICSMSQKNVVSGNKRGFADAMDGFPEGKFPGTTGINVMLSPRPSAAQPTMAKEIPSKVLQERPGVANGNAHNHTGASISGSAPASKTQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPAAIFVKVSMDGAPYLRKVDLRNHTTYQELSSALEKMFSCFTLGQCGSHGAPGREILSESKLKDLLHGSEYVVTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0159 355 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 14 348 IPR003311 GO:0005634|GO:0006355
Dod04g0159 355 MobiDBLite consensus disorder prediction 48 63 - -
Dod04g0159 355 MobiDBLite consensus disorder prediction 177 201 - -
Dod04g0159 355 MobiDBLite consensus disorder prediction 7 27 - -
Dod04g0159 355 MobiDBLite consensus disorder prediction 48 70 - -
Dod04g0159 355 MobiDBLite consensus disorder prediction 1 27 - -
Dod04g0159 355 ProSiteProfiles PB1 domain profile. 235 339 IPR000270 GO:0005515
Dod04g0159 355 MobiDBLite consensus disorder prediction 184 200 - -
Dod04g0159 355 Gene3D - 232 349 - -
Dod04g0159 355 Pfam AUX/IAA family 73 346 IPR033389 -
Dod04g0159 355 PANTHER AUXIN-INDUCED PROTEIN 14 348 - -
Dod04g0159 355 SUPERFAMILY CAD & PB1 domains 233 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0159 Dod-Chr4 1933264 1936277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0159 238 334 B3 DNA Binding Superfamily AT2G46530 36.082 1.29e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dod04g0159 AUX_IAA 3.6e-88 CL0072