Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0157 ATGGAGCTTTCTCAACTTGGTTTCCTTGAGGAACTCCTAACTCCAAGAAAAGACACATGGAGTGCTCTATCCACCACTGGGTTCAGTGATGTCTTCTTCCCTGCTGCTACTTGGACCTTTGACCCTTTTGTTGATAACCCATCTTTGGCCACTTCAAGCCCTTCCTCTTCTTTTGCTGCTGCATTCTCTTCAGCACCAACAACAACAGACCAAAGATTTGAGTGCCCTTTCACCACCACTGAACCAGCACCAACATACCCTTTTGCTGATGATGATGGATTCACAATAATGCCTGAGCTTGAGTCTCCATATGCCCCAACAGCACCACTCACACAACAACAGGAAGATCATCATAACCCTTCATTGGAGGATGAAGATGCCGGTTTGCTAGGCAGTGATGACAAGCTGAGCTTGTTGGAAGAGAGAAAGAGTGGGTGCTGCAAGGTCGAGGAACAAGCTGTGGTGGAGGTTCCAGTGGTGTTCAACATGGGCTTGTGTGGTGGGGAGAAGAAGCCCAAGCCCAAGAAGCTTGAAGGGCAGCCCTCAAAGAACCTCATGGCAGAGAGGAGGAGAAGAAAGCGCCTCAATGACCGTCTTTCCATGCTAAGGTCAATAGTCCCCAAGATCAGCAAGATGGACAGAACATCCATTCTAGGAGATACCATAGACTACATGAAGGAGCTTCTTGAAAGGATAAGCAAGTTGCAAGAGGAAGAAGTGGAGGAGGGCACAAGTCAGATAAATCTCTTGGGCATTTCTGAGGAACTCAAGCCAAATGAAGTCATGGTTAGAAATTCCCCCAAGTTTGATGTTGAGAGGAAAGACCAGGACACCAGGATCAGCATCTGCTGTGCCACAAAGCCAGGATTGCTACTGTCGACAGTGAACACCTTGGAAGCATTAGGCCTTGAGATTCAGCAGTGTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGAGGTAGCTGAACAGAGAAATAGTATTAACCCTGAAGAGATAAAGCAAGCACTATTCAGAAATGCAGGCTATGGTGGGAGATGTCTCTAG 1059 0.4693 MELSQLGFLEELLTPRKDTWSALSTTGFSDVFFPAATWTFDPFVDNPSLATSSPSSSFAAAFSSAPTTTDQRFECPFTTTEPAPTYPFADDDGFTIMPELESPYAPTAPLTQQQEDHHNPSLEDEDAGLLGSDDKLSLLEERKSGCCKVEEQAVVEVPVVFNMGLCGGEKKPKPKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERISKLQEEEVEEGTSQINLLGISEELKPNEVMVRNSPKFDVERKDQDTRISICCATKPGLLLSTVNTLEALGLEIQQCVISSFNDFSMQASCSEVAEQRNSINPEEIKQALFRNAGYGGRCL* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0157 352 CDD ACT_UUR-ACR-like 278 319 - -
Dod04g0157 352 Gene3D - 174 243 IPR036638 GO:0046983
Dod04g0157 352 MobiDBLite consensus disorder prediction 70 129 - -
Dod04g0157 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 239 IPR036638 GO:0046983
Dod04g0157 352 Pfam Helix-loop-helix DNA-binding domain 185 228 IPR011598 GO:0046983
Dod04g0157 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983
Dod04g0157 352 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 352 - -
Dod04g0157 352 PANTHER - 2 352 - -
Dod04g0157 352 SMART finulus 185 234 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0157 Dod-Chr4 1893880 1895392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0157 170 352 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 69.399 1.22e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod04g0157 HLH 7.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0157 - - gmx:100806571 436.417