Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0148 ATGAAGGTGGTTGGTAAGATGAGGAAACGAGTTTTCTTCCTGTGGTGGTTTGGAATGACCTTGCAGCTCTGCTTCTTATTGCTGTGTGCCTCTTCTGAGAAGACATCATACAGAAGAGGTTTAAGGGGCATCAACAGCCTGAAATCAAATTCTTCAGATTTTGCGGTCAAGCTCAATACAGAAAACCATCAGCAGTTGGTGGTTGACAATGGCATCGTTTCCATCACTTTGTCAATACCAGAGGGCTATATCCTTGGAGTATCCTATAATGGAATTGACAATTTACTTGAAACTGAAAATGAAGAACAAGATAGAGGGTACCTGGACGTTGTTTGGAATGAACCAGGAAAAAGTAGTATCTTTCAGAGAATCCACGGGACAAATTTTTCGGTTGTTGCTGCTGACGAGAATCTGGTGGAGATTTCATTTTTAAGGACATGGACATCTTCCATGGGTGGCTCGAATGTCCCCATTAATATAGATATAAGGTACATTTTGCGGAGAGGTGATTCAGGATTTTATTCATACGCAATATTTGATCGCCCTGAAGGATTGCCTGCGGTTGAGGTTGATCAAATTAGGATTGTTTTCAAGCTCCTTCAAGACAGGTTCAACTATATGGCGTTATCGGATAGCAGGCGAAGAAGCATGCCAACGATGAGAGACAGAGAAACAGGTGAGGTCCTAGCCTATAAGGAAGCTGTTCTCTTAACCAGACCAACTAACCCAGAATTTAGAGGAGAGGTGGATGACAAATACCAGTACTCATGTGAGAACATTGAAAACTCTGTTCATGGATGGATTACCCTTGATTCTGATGCACCCGTGGGTTTCTGGATGGTAACACCTAGCAACGAGTTCCGCAATGCTGGGCCCATCAAGCAAGACCTCACTTCTCATGTTGGCCCCATCACACTCTCTATGTTTGTGAGCACCCACTATGCTGGCAAGGAGGTAACCATGGCATTTCAAGAAGGGGAGACTTATAAGAAGGTTTTTGGCCCTGTTTTCGTTTACCTCAACTCTGCTTCAAGCGCGGATGATTCACAATCCCTCTGGTCAGATGCTGTGCAGCAGCTGTCCAAGGAAGTCCAAAACTGGCCTTACGATTTTGCACGATCACAAGATTTCGTTCCACCCCCTCAACGAGGAACAGTACTAGGAAGACTACTAGTCCAAGACTGGTACATCAAGGGAGGGAGATTTCAATATGCTAACAATGCTTATGTTGGTCTAGCATTGCCTGGAGAAGCAGGATCATGGCAGAAAGAGAGCAAGGGCTATCAATTCTGGACTCAAGCTGACCCCAAGGGATACTTTGCAATTAAAAATATTGTACCAGGGGATTATAATTTGTATGCATGGGTTCCTGGCTTTATTGGTGATTACAAATATAATGCTACAATAACCATCACACCAGGAGGAGTCATCAAATTGGATTCCCTTGTGCATAGTCCACCAAGAAATGGACCAACCCTTTGGGAAATTGGAGTCCCTGATCGAACAGCTGCAGAGTTCTATGTACCAGACCCTTACCCTACACTCTTGAACAGATTATACAACGAACAGCGTAGAGACAAGTTTAGGCAATACGGGTTGTGGGAACGTTATACGGATTTGTATCCAAATGATGATCTTGTTTACACTGTTGGTGTTAACAAGTACAGTAAGGATTGGTTTTTTGCTCATGTTACAAGGAGCACAGGAAATAAGACATACCAAGCAACGACATGGCAGATTATATTTGAACATCGAAATGACATTATTAAAGGGAATTACACCCTACAAATAGCCTTGGCATGTGCCTCTGATGCTGACTTGCAGGTTCGGTTCAATGACCCTAGTGTTTATCCACCCCACTTTGCAACAGGTCCAATAGGAGGAGACAATGCCATAGCAAGGCATGGCATCCATGGATTGCATAGGCTATTCAGCATTGATGTGCCAAGTGATTATTTATTGAAGGGGAAGAATACCATCTATCTGAGGCAATCAAGGGCCATAAGTCCTTTCCAAGGAGTTATGTATGATTATATCCGTTTAGAAAGACCACCAACCCCATCGAATTGA 2070 0.4338 MKVVGKMRKRVFFLWWFGMTLQLCFLLLCASSEKTSYRRGLRGINSLKSNSSDFAVKLNTENHQQLVVDNGIVSITLSIPEGYILGVSYNGIDNLLETENEEQDRGYLDVVWNEPGKSSIFQRIHGTNFSVVAADENLVEISFLRTWTSSMGGSNVPINIDIRYILRRGDSGFYSYAIFDRPEGLPAVEVDQIRIVFKLLQDRFNYMALSDSRRRSMPTMRDRETGEVLAYKEAVLLTRPTNPEFRGEVDDKYQYSCENIENSVHGWITLDSDAPVGFWMVTPSNEFRNAGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMAFQEGETYKKVFGPVFVYLNSASSADDSQSLWSDAVQQLSKEVQNWPYDFARSQDFVPPPQRGTVLGRLLVQDWYIKGGRFQYANNAYVGLALPGEAGSWQKESKGYQFWTQADPKGYFAIKNIVPGDYNLYAWVPGFIGDYKYNATITITPGGVIKLDSLVHSPPRNGPTLWEIGVPDRTAAEFYVPDPYPTLLNRLYNEQRRDKFRQYGLWERYTDLYPNDDLVYTVGVNKYSKDWFFAHVTRSTGNKTYQATTWQIIFEHRNDIIKGNYTLQIALACASDADLQVRFNDPSVYPPHFATGPIGGDNAIARHGIHGLHRLFSIDVPSDYLLKGKNTIYLRQSRAISPFQGVMYDYIRLERPPTPSN* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0148 689 SUPERFAMILY Galactose-binding domain-like 489 682 IPR008979 -
Dod04g0148 689 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 58 685 - -
Dod04g0148 689 Gene3D - 490 682 - -
Dod04g0148 689 CDD RGL4_C 494 682 - -
Dod04g0148 689 Gene3D - 57 361 IPR014718 GO:0030246
Dod04g0148 689 SUPERFAMILY Starch-binding domain-like 378 480 IPR013784 GO:0030246
Dod04g0148 689 CDD RGL4_N 59 341 - -
Dod04g0148 689 CDD RGL4_M 382 482 IPR029413 -
Dod04g0148 689 Pfam Rhamnogalacturonate lyase family 49 249 IPR010325 -
Dod04g0148 689 Pfam Polysaccharide lyase family 4, domain II 406 478 IPR029413 -
Dod04g0148 689 SUPERFAMILY Galactose mutarotase-like 60 349 IPR011013 GO:0003824|GO:0005975|GO:0030246
Dod04g0148 689 Gene3D - 378 481 - -
Dod04g0148 689 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 58 685 - -
Dod04g0148 689 Pfam Polysaccharide lyase family 4, domain III 492 681 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0148 Dod-Chr4 1693265 1700114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0148 52 686 Polysaccharide Lyase AT1G09910 54.631 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0148 K18195 - gmx:100776664 1153.66