Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0136 ATGGCTCCTACTCCTACCGCTACCAACTGGCTTTCGTTTTCCTTGTCTCCAATGGAAATGCTCAGCTCCACAAACCCTCACTTCCTTTCTGCTCATACTTCTTCTCCTCCTCACTACTTCCTCGACAATTTCTATGCCAACGGGTGGACTCACCCCAAGTCCGAGGTAATACTGAACAATAGCAACGAAGCGGAGCAGAAAGAAAACCAAGAACAACACCACAACAACAACAACATGGCTCATGAACCTTCCCTTATTCTCAAGCCACCACTGGCGGTGCCAAAGCTCGAAGATTTCTTCGAAACGGAGACACAGGATTCTTCATCCCTCACCCAAATGTATTACTTTAATAACGACCAGCAAGATCTGAAAGCGATTGCTGGGTTCGAAGCGTTCTCCAACACTACGAACTCGGGCTCCGAGGTCGAATATGACTCGGGCTCGGTGGTCAAGACTCGGGGTGGTGGTGCGCCCGGCGACTTTGTTGGTGGAGCTAACTCTGTTGAGTCTTCAAGGAACGAGTTGGTGGTCTCTGGTGGTGGCAGCTCCAAGGGTACTTTGTCTCTTGGTGCTGTTGCTGAGGATTCTGATCATGATAAGACCATTGCTGTGGCTCAGGATTCTCATGATAAGGCCATTGTTGTGGCTGCTGATTCTGATGGTTCCAAGAAGGTTGCTGATACCTTTGGCCAGCGAACTTCAGTATACAGAGGTGTCACAAGGCACAGATGGACGGGTAGATACGAAGCACATCTATGGGATAATAGCTGCAGAAGAGAGGGTCAGGCCAGGAAAGGGCGTCAAGTGTATTTGGGCGGATATGACAAGGAAGAAAAGGCCGCAAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGATCCACAGCTACTACAAACTTCCCTGTCTCTAATTACACAAAGGAATTGGAGGAAATGAAACATGCAGGAAAGCAAGAATTTATTGCATCACTGCGAAGGAAAAGTAGCGGTTTCTCCAGGGGAGCTTCCATATACAGGGGTGTTACTAGGCATCACCAACAGGGTAGATGGCAAGCTCGAATAGGCCGAGTTGCAGGAAACAAGGATCTATACCTGGGAACATTTGCAACTGAAGAGGAAGCTGCAGAAGCATATGATATCGCAGCCATAAAGTTCAGAGGCTTAAACGCTGTAACCAACTTTGAGATGAGCAGATACGATGTGCAAGCCATAATGAATAATTCTCTCCCCGTTGGAGGGACGGCGAAACGCTTGAGGCTTTCCCTAGAATCAGAAGAGAAGGAAGCTCCCATAACTAGCAGCACTACTGATCTGCAACCCCAGTGCACAAATGCGAGTAGCAGTGTCAACTTCTCAACCATTCAGCCAGTGGCTCCTACTCCTACACAGTTTGATTCTGCAGCAGCATACTACCACCACAACCACTTCCACCATTTTCACCCTACTAATGCTGTCAATGGCACAGCAAAATCAGTTGCTGCAGTGACTATGAGTGCACTTCCAGCAGCACCTGATTTCTTTATATGGCCTCATCAATCCTATTGA 1545 0.4803 MAPTPTATNWLSFSLSPMEMLSSTNPHFLSAHTSSPPHYFLDNFYANGWTHPKSEVILNNSNEAEQKENQEQHHNNNNMAHEPSLILKPPLAVPKLEDFFETETQDSSSLTQMYYFNNDQQDLKAIAGFEAFSNTTNSGSEVEYDSGSVVKTRGGGAPGDFVGGANSVESSRNELVVSGGGSSKGTLSLGAVAEDSDHDKTIAVAQDSHDKAIVVAADSDGSKKVADTFGQRTSVYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARAYDLAALKYWGSTATTNFPVSNYTKELEEMKHAGKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMSRYDVQAIMNNSLPVGGTAKRLRLSLESEEKEAPITSSTTDLQPQCTNASSSVNFSTIQPVAPTPTQFDSAAAYYHHNHFHHFHPTNAVNGTAKSVAAVTMSALPAAPDFFIWPHQSY* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0136 514 CDD AP2 336 397 IPR001471 GO:0003700|GO:0006355
Dod04g0136 514 Gene3D AP2/ERF domain 235 303 IPR036955 GO:0003700|GO:0006355
Dod04g0136 514 Gene3D AP2/ERF domain 337 397 IPR036955 GO:0003700|GO:0006355
Dod04g0136 514 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 7 492 - -
Dod04g0136 514 Pfam AP2 domain 337 387 IPR001471 GO:0003700|GO:0006355
Dod04g0136 514 Pfam AP2 domain 234 293 IPR001471 GO:0003700|GO:0006355
Dod04g0136 514 ProSiteProfiles AP2/ERF domain profile. 235 301 IPR001471 GO:0003700|GO:0006355
Dod04g0136 514 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 7 492 - -
Dod04g0136 514 SMART rav1_2 337 401 IPR001471 GO:0003700|GO:0006355
Dod04g0136 514 SMART rav1_2 235 307 IPR001471 GO:0003700|GO:0006355
Dod04g0136 514 CDD AP2 234 303 IPR001471 GO:0003700|GO:0006355
Dod04g0136 514 ProSiteProfiles AP2/ERF domain profile. 337 395 IPR001471 GO:0003700|GO:0006355
Dod04g0136 514 SUPERFAMILY DNA-binding domain 336 397 IPR016177 GO:0003677
Dod04g0136 514 SUPERFAMILY DNA-binding domain 234 303 IPR016177 GO:0003677
Dod04g0136 514 PRINTS Ethylene responsive element binding protein signature 377 397 IPR001471 GO:0003700|GO:0006355
Dod04g0136 514 PRINTS Ethylene responsive element binding protein signature 236 247 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0136 Dod-Chr4 1513757 1519757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0136 93 514 AP2-EREBP Transcription Factor Family AT5G10510 52.724 3.18e-142 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dod04g0136 AP2 9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0136 K09285 - gmx:100777168 568.155