Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0117 ATGGACTTCGAAGAAGAGCAGGAGGAAGAGCTGAGCATGCCCCCACCGAGTTACGAAGACTCCCGAGTCAAAATGCCGTGTCATCAGGGACAAGAAGGAGATCAACCACCACCAGCAGCCATGGCGGCGCTAAACAGTGGGAAGGGGAGGTACAGAGAGTGCCTCAAGAACCACGCGCTTGCCATCGGAGGCCACGCACTCGACGGCTGCTGCGAGTTCATGGCTGCCGGAGCCGACGGCACCATCGACGCCCTCAAATGCGCCGCCTGTAACTGCCACCGCAACTTCCACCGCAAGGAAACAATCGACACTACACCCCCCTCCGCCGCCGCAGACCCTTACCTGCAGCTCCCTCATCACCACCACCACCCCCACAACAACCCTTACCTTAACCGCCACCACCAACCGTTTCCGCAATTCGCGGCGTGTTATCGGGCCCAAGGTGCCGGGTACCTTCTCGTGGCCGGACAGCAGACAGGAGCAGCAGCACCCGCCACGCTGGCGCTGCCGTCGATCTCCGGGGGCGGCGGTGGGACACAGAGCACCAGGGACGAGGAGCATGAGGATGTTTCGGAACCGAGTGGCGGAGGCGGAGGAGGAGGAAGTGGCGGTGGCGGTGGTGGTGGATCGTCGTCGTCGAAGAAGAGGCACAGGACGAAGTTCACGCAGGAGCAGAAGGATAAGATGCTGGATTTCGCGGAGAGGCTTGGGTGGAGGATTCAGAAGCATGACGAGGTTGCGGTGCAGGAGTTCTGCGACCAGAATGGTGTGAAGCGTCATGTTTTTAAGGTTTGGATGCATAACAACAAGCACACCCTCGGTAAGAAGCTCTAG 834 0.6019 MDFEEEQEEELSMPPPSYEDSRVKMPCHQGQEGDQPPPAAMAALNSGKGRYRECLKNHALAIGGHALDGCCEFMAAGADGTIDALKCAACNCHRNFHRKETIDTTPPSAAADPYLQLPHHHHHPHNNPYLNRHHQPFPQFAACYRAQGAGYLLVAGQQTGAAAPATLALPSISGGGGGTQSTRDEEHEDVSEPSGGGGGGGSGGGGGGGSSSSKKRHRTKFTQEQKDKMLDFAERLGWRIQKHDEVAVQEFCDQNGVKRHVFKVWMHNNKHTLGKKL* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0117 277 MobiDBLite consensus disorder prediction 1 40 - -
Dod04g0117 277 Pfam ZF-HD protein dimerisation region 50 101 IPR006456 -
Dod04g0117 277 MobiDBLite consensus disorder prediction 103 133 - -
Dod04g0117 277 Gene3D - 199 274 - -
Dod04g0117 277 SUPERFAMILY Homeodomain-like 201 275 IPR009057 -
Dod04g0117 277 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 51 100 IPR006456 -
Dod04g0117 277 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 214 270 IPR006455 -
Dod04g0117 277 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 35 276 - -
Dod04g0117 277 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 35 276 - -
Dod04g0117 277 MobiDBLite consensus disorder prediction 168 224 - -
Dod04g0117 277 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 50 100 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0117 Dod-Chr4 1354609 1355910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0117 1 273 ZF-HD Transcription Factor Family AT4G24660 42.754 8.71e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dod04g0117 ZF-HD_dimer 5.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0117 - - gmx:100798992 261.151