Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0112 ATGGAAGAAGCACTAAGGCGTCTCAATGGCATGGCTCCGATCCAAGAGCAAGACCCGCACGACCTCATCTCCGACCACCACCACCACAACAACAAGAAGGGCGCCAGCAACAAGAGGCCGGCGGCAAGAGAAAACGGCGGCGGAGGCTCAGGCAGCGGAACGATGAGGTACCGTGGGGTCAGGCGGAGGCCCTGGGGCCGTTACGCGGCGGAGATAAGGGACCCTCAGTCGAAGGAGAGGCGATGGCTCGGGACGTTTGACACGGCGGAGGAAGCCGCCTGCGCCTACGACTGCGCCGCCAGAGCCATGCGCGGCGCCAAGGCACGAACCAACTTCGTGTACCCTGATTCTCCTCCTCATCCTCATCAAAACCATCTTCATCATCTTCACCATCATCACCCCCCTTCAGCCGCTGATCAACAACTCTTTCAATCCTTCAACTTTCCCAAACAATCTCCTCAGCAGCAGTGCCACATCAGCAGCAAGCTAGTTCAGAGCCGCCACGTCAGCAGCGGCGGTGGTGACTTTGCGGTTGGTGGTTGTGGTGGTGGTTTGGCTGCACCGTTATCATCATCAACGCATAGAAACGTTAACTCTTCTTCTTCCCTTAACATGCTTTTGTTCCGTGATTTTCTCAATTCGAACCCGTCTCTGGTTTCTTCAGCTTCTTCTGGGGTTCCGCATCAGCACCAGTTTTACAACAAGGACGGTGTTTCTTCTTCTTCATCATCATCTTCTGTTTCTTCGGTACATTCCACATGTTCGTGTTTCAACCACAGTGGTTGTGGTGTTGTTGGTGCCAACGGAACTCCCGAAGTTGCTGAAGCTGTTGATGAAGACTCAGAGTTCTTTCCTAGAGAGCATCCAGACTCTGGTTTATTGGAAGAGATAGTTCAAAGCTTCCTGCCAAAAAAATCAAAACCCGCGTCAAAGAAAAATTGCGAGTCTGTGCTCAAAACCGAGAGTACTTTCTCCATGCCGGAGCCGTTTCCTCATCAACCCACCATGACTGATCACATGTTAGTTTCTTCTTCTTCTTCTTCTGTCACTCATCATCAGGGCTATGATCACCCCCAGACGAGGAGTTATGGTTTGCCTTTTGATCCTCAGATTTTCCCGATGCAGCAATTTGATCCCTTTAGTGGTGGGTTTAACAGCGTGCAGGCAATGCCTTTGATGGGAAACGAAGAGTTTGTGATGATGAATCATGCAGCTGCAGCAGCAGCAGCAGCAGCAGCGTGTCCTACTACTACTATCGTGGAAGATGTTTTTAAGTATCCAGAGCTTTTCAATGCATTTGCAGCCAGGATGCAAAATGCTTAA 1323 0.5102 MEEALRRLNGMAPIQEQDPHDLISDHHHHNNKKGASNKRPAARENGGGGSGSGTMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGAKARTNFVYPDSPPHPHQNHLHHLHHHHPPSAADQQLFQSFNFPKQSPQQQCHISSKLVQSRHVSSGGGDFAVGGCGGGLAAPLSSSTHRNVNSSSSLNMLLFRDFLNSNPSLVSSASSGVPHQHQFYNKDGVSSSSSSSSVSSVHSTCSCFNHSGCGVVGANGTPEVAEAVDEDSEFFPREHPDSGLLEEIVQSFLPKKSKPASKKNCESVLKTESTFSMPEPFPHQPTMTDHMLVSSSSSSVTHHQGYDHPQTRSYGLPFDPQIFPMQQFDPFSGGFNSVQAMPLMGNEEFVMMNHAAAAAAAAAACPTTTIVEDVFKYPELFNAFAARMQNA* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0112 440 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Dod04g0112 440 MobiDBLite consensus disorder prediction 1 58 - -
Dod04g0112 440 Pfam AP2 domain 56 105 IPR001471 GO:0003700|GO:0006355
Dod04g0112 440 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Dod04g0112 440 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 440 - -
Dod04g0112 440 SUPERFAMILY DNA-binding domain 56 113 IPR016177 GO:0003677
Dod04g0112 440 Gene3D AP2/ERF domain 55 114 IPR036955 GO:0003700|GO:0006355
Dod04g0112 440 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 1 440 - -
Dod04g0112 440 CDD AP2 56 112 IPR001471 GO:0003700|GO:0006355
Dod04g0112 440 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Dod04g0112 440 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0112 Dod-Chr4 1280168 1281490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0112 1 135 AP2-EREBP Transcription Factor Family AT1G24590 55.479 7.42e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod04g0112 AP2 6.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0112 - - aprc:113860142 307.375