Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0109 ATGGTGGGCGACGGCGACAACCTCAAGTTGCTCTGTAGCTACGGCGGCAAAATCCTCCCCCGCTACCCCGACGCCAAGCTCCGCTACCGAGGCGGCCACACCCGCCTCCTCTCCCTCCCTCGCTCCAGTCCCTTCTCCGAGCTGCTTGTGAAGCTGGGAGAGCTGTGCGGCTCACCCGTGACCCACCTCCGCTGCCAACTTCCCACCGAAGACCTCGACGCCTTGGTCTCCATCACCTCCGACGAGGATCTCGCCAATCTCCTCGAGGAATACGACCGCGTTTCCTCTCCCAAGATCAGAGCCTTCCTTTCCTCATCATCTTTGTCGTCGTCTTCGTCCTCCTCCTCGCCCTCATCCTTGACGACGTCGTCGTTTCACTGCCCAATGTACACGCCAAACCCGCCGGTGGCGATTGGAATGAAAGGATCGGGTGGGAATGGGACTGGGATTAGGAATGCTGCTGCTTTTCCCTGCTACTGTTACCGTGCCCCGGGGAACGGTGGTGTCGTTTACCTGGTATTGTGCGAAGACAAATCAGCAGAGCAATCAGAAGGATAG 558 0.5914 MVGDGDNLKLLCSYGGKILPRYPDAKLRYRGGHTRLLSLPRSSPFSELLVKLGELCGSPVTHLRCQLPTEDLDALVSITSDEDLANLLEEYDRVSSPKIRAFLSSSSLSSSSSSSSPSSLTTSSFHCPMYTPNPPVAIGMKGSGGNGTGIRNAAAFPCYCYRAPGNGGVVYLVLCEDKSAEQSEG* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0109 185 Pfam PB1 domain 25 104 IPR000270 GO:0005515
Dod04g0109 185 SMART PB1_new 22 106 IPR000270 GO:0005515
Dod04g0109 185 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 6 124 - -
Dod04g0109 185 Gene3D - 25 106 - -
Dod04g0109 185 CDD PB1_UP2 11 102 - -
Dod04g0109 185 PANTHER OS05G0427100 PROTEIN-RELATED 6 124 - -
Dod04g0109 185 SUPERFAMILY CAD & PB1 domains 24 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0109 Dod-Chr4 1245502 1247082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0109 8 112 MAP Kinase Kinase Kinase AT1G04700 50.459 1.69e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0109 - - aprc:113859578 169.088