Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0088 ATGGAGGACGAAATGTACGGATTGCAGTCCACGGCGGAGTACTCGGACAAGGCGCCGATGACGCCGGAGAATCTGATATTCCCTGCGGAGTACGACAGCTACCTGATGATGACCTCCGCCGCCCGGGTTCCCATCTTCGGATGCGACGAGCTCCTCTACGCCTCCGCCGACGCCGCCGCCGCTGAAGCTGAACCCTCATCCAACATCGTTACAATCACTCCTCCCCAAATTGAGCGCCACAGTAGCGACGCTAATTCGTCTCTGATCAAAGCCAAAATCGCCTCTCACCCTCACTACCCTCGCCTCCTCCAAGCCTACATCGACTGCCAGAAGGTGGGAGCGCCTCCAGAGATAGCGTGTTTGTTAGAGGAAATCCAGAGGGAAAACGACCTTTGCAAGAGGGACGTTGGTTTCACGTGCTTAGGAGCCGATCCCGAGCTTGACGAGTTCATGGAGACATACTGTGACATGCTGGTGAGGTATAAGTGTGATCTGACGAGGCCTTTAGACGAAGCGACCAGCTTCCTCAACAAGATCGAAACGCAGCTCAGTAATCTCTGCACTGCTGGTGCTTCCGCTCCACCACTTTCCGATGACGGGGATGTGTCCTCGGAAGAAGATCTTAGCGCTGGAGATGTTGATGCTCAAGATGGCCAATTGCAGGATGAAGATCGCGGTCTTAAGGACAGGCTTTTACGAAAGTTTGGTAGTCACATTAGTTCTTTGAAGTTGGAGTTCTCAAAGAAGAAAAAGAGGGGGAAGCTACCCAAAGACGCTAGGCAAGCACTGCTTCAGTGGTGGAATAGTCACTATAAATGGCCATACCCAACGGAAGCTGATAAGATTGCACTGGCCAAGTCAACTGGGCTAGATCAGAAGCAAATAAACAATTGGTTTATTAATCAAAGAAAGCGTCATTGGAAACCATCAGAGAATATGCAGTTTAATTTCTGTGATGGACAGATAATCTGA 972 0.5072 MEDEMYGLQSTAEYSDKAPMTPENLIFPAEYDSYLMMTSAARVPIFGCDELLYASADAAAAEAEPSSNIVTITPPQIERHSSDANSSLIKAKIASHPHYPRLLQAYIDCQKVGAPPEIACLLEEIQRENDLCKRDVGFTCLGADPELDEFMETYCDMLVRYKCDLTRPLDEATSFLNKIETQLSNLCTAGASAPPLSDDGDVSSEEDLSAGDVDAQDGQLQDEDRGLKDRLLRKFGSHISSLKLEFSKKKKRGKLPKDARQALLQWWNSHYKWPYPTEADKIALAKSTGLDQKQINNWFINQRKRHWKPSENMQFNFCDGQII* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0088 323 SUPERFAMILY Homeodomain-like 247 318 IPR009057 -
Dod04g0088 323 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 3 319 - -
Dod04g0088 323 ProSiteProfiles ELK domain profile. 226 246 IPR005539 GO:0003677
Dod04g0088 323 Pfam ELK domain 227 247 IPR005539 GO:0003677
Dod04g0088 323 SMART ELK_2 226 247 IPR005539 GO:0003677
Dod04g0088 323 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 319 - -
Dod04g0088 323 SMART KNOX1_2 87 131 IPR005540 GO:0003677|GO:0005634
Dod04g0088 323 ProSiteProfiles 'Homeobox' domain profile. 246 309 IPR001356 GO:0003677
Dod04g0088 323 SMART KNOX2_2 137 188 IPR005541 GO:0003677|GO:0005634
Dod04g0088 323 Pfam KNOX2 domain 141 187 IPR005541 GO:0003677|GO:0005634
Dod04g0088 323 Gene3D - 244 316 - -
Dod04g0088 323 Pfam Homeobox KN domain 266 305 IPR008422 GO:0003677|GO:0006355
Dod04g0088 323 SMART HOX_1 248 313 IPR001356 GO:0003677
Dod04g0088 323 ProSitePatterns 'Homeobox' domain signature. 284 307 IPR017970 GO:0000981|GO:0006355
Dod04g0088 323 Pfam KNOX1 domain 89 130 IPR005540 GO:0003677|GO:0005634
Dod04g0088 323 MobiDBLite consensus disorder prediction 194 221 - -
Dod04g0088 323 CDD homeodomain 258 310 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0088 Dod-Chr4 994257 1005698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0088 3 319 Homeobox Transcription Factor Family AT1G23380 64.000 2.85e-137 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dod04g0088 KNOX2 5.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0088 - - adu:107481351 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0088 04 994257 1005698 Dod04g0088 04 994257 1005698 ECH