Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0078 ATGTCAACACTGAGCCATCTTTTTGATCTTCCTGAACAGATATGTTACGTGCAATGTGGATTCTGCACCACCATCTTAATGGTAAGTGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTCAGATGTGGGCACTGCACAAGCCTCCTCTCTGTTAATATGATGAAAGCTTCCTTTGTCCCTTTCCACCTTTTAGCTTCCCTTACTCATCTTGAGCCAAAAGAAGTTAGCTCACATGATGAGGATGCAAACAAGACTGTGAACAACCATAATGCATCCATGATTACCTATTCTGATTGTGAGGAAGAGAATAATCTTACTCCAATGGCCGGTGTTGTGAATAAACCACCAGAGAAGAGACAGCGAGCACCATCAGCATATAACCGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTGAAAACCCTGCCATGGCCCACAAGGAAGCCTTCAGTACTGCTGCAAAAAATTGGGCCAATTTCCCCCCATATCACTCTAGAGGGGATGAAGAGAGCTGTAGCCAAACTGGCCAACTTATGGATCCGGACTCCAATGTAGAGCTTCATCATGATGCTAAGGTCAATGAAGAAGGGCAAGGTTTCCGTGGAAGAAAAGTTCCAAGGAATTCTACCTTGGCAAGGACACCGTTTGAGTGA 657 0.4475 MSTLSHLFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHLEPKEVSSHDEDANKTVNNHNASMITYSDCEEENNLTPMAGVVNKPPEKRQRAPSAYNRFIKEEIKRLKAENPAMAHKEAFSTAAKNWANFPPYHSRGDEESCSQTGQLMDPDSNVELHHDAKVNEEGQGFRGRKVPRNSTLARTPFE* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0078 218 PANTHER PROTEIN YABBY 6-RELATED 1 177 IPR006780 GO:0007275
Dod04g0078 218 MobiDBLite consensus disorder prediction 184 203 - -
Dod04g0078 218 SUPERFAMILY HMG-box 111 163 IPR036910 -
Dod04g0078 218 PANTHER AXIAL REGULATOR YABBY 4 1 177 - -
Dod04g0078 218 CDD HMGB-UBF_HMG-box 122 171 - -
Dod04g0078 218 MobiDBLite consensus disorder prediction 162 218 - -
Dod04g0078 218 Gene3D High mobility group box domain 111 167 IPR036910 -
Dod04g0078 218 Pfam YABBY protein 11 165 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0078 Dod-Chr4 848192 850242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0078 2 218 C2C2-YABBY Transcription Factor Family AT1G23420 58.079 1.49e-75 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Dod04g0078 YABBY 1.8e-63 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0078 K25796 - gmx:100804172 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0078 04 848192 850242 Dod04g0078 04 848192 850242 ECH