Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0063 ATGAGTGGTTTGAGTGTTGTGGAGTGTCTTAGGCCACTTGTTGAGACCAAGGCTTGGGACTTTGGTGTTGTTTGGAAATATGGGGATGACCCTACTAGGTTCATTGAGTGGATGGATTGCTGTTGTAGAGGAGGTTGCAATGGAAACATGGAGTTGGGGAAGATCAAAGATGAAATGAATGAACAGTACAACTTGGCTCCCATTTGCAGGGATCCCCACTTTCAGCATCCAGTTAGAACAAAGGCTTGCCTGGTTCTTTCCCAGCTTCCTTTTGCAATGTCTCTCTATTCTGGTGTCCATGGAGAGGTTGCAATATCACAGGAACCAAGATGGCTTACCCAGCAGGGAATTGGAACACAAGTTTTGATCCCTATTGTTGGCGGTCTTGTCGAGCTCTTCGCCACAAAGCTTATTCCAAAGGATAGAAGTATGATAGAGTTCATAACAGCACGCTGTTGTGTCTCCTTGAAGCAAGAAGCTATATCAGCACAGAGCTACACCAGTATGAACTTCAATGAACATCTTCCATCAGAAGAACAAGACCCACAGTGTTGGCCACCACGCACAAAAACTTTAACTGCCAGTGTCCATATGAATGCAGCAAACTGGTTCAAGCCCCATCTTTCTAACATTGAAGGACCCTCAAGTGGATCTAATCCTTCAAATGAATACGCATCATTTGATCCAGACTTTGTCTGCTTGACTCAGCATGAATATCTGAAGCAATCAGTAAAAACATCTGCTTCCCCAAAAACTAAGAGGACCAAGTGCAATGAAACTTCAGGGGAACAACAGAGAGGTTTGAGTTCCCATTGTGGAAATGACAAAGAAGATAAAACAAAATTGGTCAGGGAGCCTCAAAAGGAAGGTTTCCATGCTAAAAATCTTGCCACAGAGAGGAAAAGGAGGAACAGGATAAAAAATGGGCTTTTCTCTTTAAGGTCTCTAGTCCCAAAGATTACCAAGATGGATAGAGCATCAATTCTTGCAGATGCAATTGACTATATAAAGGAATTGCAGGGAAAAGTAATCAAACTTAAAGATGAGGCTAGGGATTTGGAAGAAGAGGACAATGAGAACAACACACCGCAATCGATGACGAGGACAATCAAAGAATATGGAGGAACCAGAAGTCTCCCTCTTACTGAGCTCAATCGAAGTTCTTCTGATTGCATCAAACAGATGGAGATGAAGCTGCAAGCAGAAGTGAATCATATAAGCAAGACAGAGTTGTTGATTAAGGTATACTGTAAGCAGAAGCCAGGTGGGTTTTCAAGGTTGATGGAAGCTATAAATTCATTTGGACTGCAGGTGGAAAATGCCAATATGACCACACTTGATGGAAAATTCCTGATCATTCTGACAGTCAAGGCAGCCAAGCAGGATATTCACCCAACAGAATTGAAAGAGTATTTGATAGAGCAAACAGGTTGA 1434 0.4247 MSGLSVVECLRPLVETKAWDFGVVWKYGDDPTRFIEWMDCCCRGGCNGNMELGKIKDEMNEQYNLAPICRDPHFQHPVRTKACLVLSQLPFAMSLYSGVHGEVAISQEPRWLTQQGIGTQVLIPIVGGLVELFATKLIPKDRSMIEFITARCCVSLKQEAISAQSYTSMNFNEHLPSEEQDPQCWPPRTKTLTASVHMNAANWFKPHLSNIEGPSSGSNPSNEYASFDPDFVCLTQHEYLKQSVKTSASPKTKRTKCNETSGEQQRGLSSHCGNDKEDKTKLVREPQKEGFHAKNLATERKRRNRIKNGLFSLRSLVPKITKMDRASILADAIDYIKELQGKVIKLKDEARDLEEEDNENNTPQSMTRTIKEYGGTRSLPLTELNRSSSDCIKQMEMKLQAEVNHISKTELLIKVYCKQKPGGFSRLMEAINSFGLQVENANMTTLDGKFLIILTVKAAKQDIHPTELKEYLIEQTG* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0063 477 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 64 476 - -
Dod04g0063 477 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 292 359 IPR036638 GO:0046983
Dod04g0063 477 ProSiteProfiles ACT domain profile. 412 477 IPR002912 -
Dod04g0063 477 MobiDBLite consensus disorder prediction 244 269 - -
Dod04g0063 477 Coils Coil 329 356 - -
Dod04g0063 477 Gene3D - 407 475 - -
Dod04g0063 477 SUPERFAMILY ACT-like 410 471 IPR045865 -
Dod04g0063 477 Pfam Helix-loop-helix DNA-binding domain 297 340 IPR011598 GO:0046983
Dod04g0063 477 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 149 IPR025610 -
Dod04g0063 477 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 290 339 IPR011598 GO:0046983
Dod04g0063 477 SMART finulus 296 345 IPR011598 GO:0046983
Dod04g0063 477 MobiDBLite consensus disorder prediction 244 280 - -
Dod04g0063 477 Gene3D - 283 357 IPR036638 GO:0046983
Dod04g0063 477 PANTHER TRANSCRIPTION FACTOR BHLH90 64 476 - -
Dod04g0063 477 MobiDBLite consensus disorder prediction 352 373 - -
Dod04g0063 477 CDD ACT_UUR-ACR-like 411 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0063 Dod-Chr4 734224 737647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0063 5 444 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 32.041 1.54e-67 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod04g0063 bHLH-MYC_N 6.5e-17 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0063 - - gmx:100807261 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0063 04 734224 737647 Dod04g0063 04 734224 737647 ECH