Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0048 ATGGGGTTCATGAGTTATTGCAGAAGCGTGGTGAAGGTGATGGAGGTTGTTGATGGCGAAGAAGAGATCAGTAATAACTCAAACTCAAAATGTGACGATCCAAGAAGTGGGAGTGTTTTGATGAGTTGCTTCAAGTTCGATGATTTTCGATGCCCCATCTCTCTGGAGTTGATGACTGATCCGGTGACGATAGAGACTGGTCACACTTATGATCGTTCTTCAATCCTCAAATGGTTCAGGAGTGGGAACCACGTTTGTGCCAAGACGGGTAAGAGGCTCAGCAGCATTGAATTGGTCCCGAATCTGGCGATCCGGAGGCTGGTTCATCAGTATTGCTCTCAGAATGGCATCTCTTTTGTTGCCGATCAGGCTCGCCGGAGTCGCGGCAGCAGTGTCACAAGGACGGCGCAGCCTGGGAGTTTGGCGGCAGAGGAAGCCATGAGAATGGTGGCCAGTTTTCTCAGTGGAAGACTTGAGAATGGAACAAGGGGAGAGAAGAATAGAGCTGCTTATGAGATGAGGATTCTTTCCAAAACTAGCATTTTTAACAGGTCTTGTTTGGTGGAATCTGGTTCTATCCCTCTTTTGTTGAAGCTGTTGACATGGAGGGATGCATCAGCACAAGAGAATGCAATTGCAGCACTTCTAAACCTCTCAAAACACCCAAAGGGTAGAGCTGAGATGGTTGAGATTTGGGGTATAGAATTGTTTGTGGGTGTCCTAAGTAAGGGGCTAAAGATTGAAGCTCGCCATCATGCTGCTGCTGTTTTGTTCTACCTTGCTTCATGTAAGGAGGAGTATGGGAAAATGATAGGGGAGGAACCAGAAGCAATTCCATCTTTGGTTAGGCTAATCAACGATGGCTCCGAACGCGGCAAGAAGAATGGCTTGGTTGCAATGTTTGGCCTCCTTATGCACCATGAGAATCACAGAAGGGTGCTTGCATATGGGGCAGTACCTTTGCTGGTTAACATCTTGAAAACATGTGAGAATGAAGATCTTGTCACAGATTCACTAGCAGTTCTAGCAACTCTGGCAGGGAAGAGTGATGGAACAACAGCAATCCTTCATTGTGGGACTTTGCATGTAGCTGTTGAGATTTTGAAGTCTTCAACTTCAAGGGTGGGGAAGGAGCACTGCATGTCTTTATTACTTTCTCTATCAATAAATGGAGGAGAAGATGTGGTTTCTCATTTGGTGAAGTTCCTTTCTCTTATGGGGTCCTTATATTCCCAACTCAGTGAAGGCACTTCTCTATCGAGCAAGAAGGCCAGTGCTCTCATCAGGATCCTCCATGATTTTTATGAAAGGAGGTCATCTGGCTTTAAGACTTCTTCTGCTCTTCCACAAGAACAGGTTTATTCACGTGTGGTAACCCGGGTTGTTTTTTGTTACCTGGGCATTCCTTCATTTTTGTTTCAACACATGAACTGTAGATAG 1440 0.4562 MGFMSYCRSVVKVMEVVDGEEEISNNSNSKCDDPRSGSVLMSCFKFDDFRCPISLELMTDPVTIETGHTYDRSSILKWFRSGNHVCAKTGKRLSSIELVPNLAIRRLVHQYCSQNGISFVADQARRSRGSSVTRTAQPGSLAAEEAMRMVASFLSGRLENGTRGEKNRAAYEMRILSKTSIFNRSCLVESGSIPLLLKLLTWRDASAQENAIAALLNLSKHPKGRAEMVEIWGIELFVGVLSKGLKIEARHHAAAVLFYLASCKEEYGKMIGEEPEAIPSLVRLINDGSERGKKNGLVAMFGLLMHHENHRRVLAYGAVPLLVNILKTCENEDLVTDSLAVLATLAGKSDGTTAILHCGTLHVAVEILKSSTSRVGKEHCMSLLLSLSINGGEDVVSHLVKFLSLMGSLYSQLSEGTSLSSKKASALIRILHDFYERRSSGFKTSSALPQEQVYSRVVTRVVFCYLGIPSFLFQHMNCR* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0048 479 SUPERFAMILY RING/U-box 47 119 - -
Dod04g0048 479 CDD RING-Ubox_PUB 49 91 IPR045210 -
Dod04g0048 479 SMART Ubox_2 48 111 IPR003613 GO:0004842|GO:0016567
Dod04g0048 479 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 1 447 - -
Dod04g0048 479 SUPERFAMILY ARM repeat 154 431 IPR016024 -
Dod04g0048 479 ProSiteProfiles U-box domain profile. 44 118 IPR003613 GO:0004842|GO:0016567
Dod04g0048 479 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 191 233 IPR000225 GO:0005515
Dod04g0048 479 Gene3D - 144 433 IPR011989 -
Dod04g0048 479 Pfam U-box domain 47 115 IPR003613 GO:0004842|GO:0016567
Dod04g0048 479 Pfam Armadillo/beta-catenin-like repeat 183 219 IPR000225 GO:0005515
Dod04g0048 479 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 119 IPR013083 -
Dod04g0048 479 SMART arm_5 221 262 IPR000225 GO:0005515
Dod04g0048 479 SMART arm_5 179 220 IPR000225 GO:0005515
Dod04g0048 479 SMART arm_5 306 347 IPR000225 GO:0005515
Dod04g0048 479 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 317 360 IPR000225 GO:0005515
Dod04g0048 479 PANTHER U BOX DOMAIN-CONTAINING 1 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0048 Dod-Chr4 581816 583255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0048 1 452 U-box Gene Family AT1G10560 46.171 3.97e-120 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0048 - - gmx:100795816 573.163