Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0040 ATGGCATCACGATCGTATGTTAATCTCTTAGACTTAGCTTGTGGAGACTTGCTGGATATTCCTCACACCCCAAGAGCTCTTCCAAGGATTATGACTGTTCCTGGAATTATCTCTGACTTGGATGGTTATGGTTGTAATGATGGGGATTCAGATGTAAGCTCCTCTGGATGTCGGGAGCGGAAAATCATTGTGGCAAACATGCTGCCATTGCAGGCTAAAAGAGATATACAAACTGCTAAGTGGTGCTTCAGTCTGGATGAGGATTCGATTTTACTACAATTGAAAGATGGTTTTTCTTCTGATACTGAGGTAATATATGTGGGTTCCCTCAAGGTTGATATAGATGCCAGTGAGCAGGAAGAAGTTGCTCAGAGATTAATGGATGACTTTAATTGTGTACCTACCTTTCTGCCCCATGATCTCCAGAGAAAATTCTATCTTGGCTTTTGTAAGCAGCAGCTTTGGCCTCTCTTTCATTATATGCTACCAATGTGCCCAGATCACGGTGACCGCTTTGACCGTGTGCTTTGGCAAGCTTATGTTTCTGCAAACAAAATATTTGCAGACAAGGTTATGGAAATAATTAATCCTGATGATGATTTTGTTTGGGTTCATGATTATCACCTGATGGTTTTGCCTACTTTCTTGAGGAAGCGATTTAATCGAGTTAAACTTGGATTCTTCCTGCACAGTCCTTTCCCTTCATCTGAAATTTATCGAACTTTGCCTGTAAGGGATGAAATTTTGAGGGGACTTTTGAATGCTGATTTAATCGGTTTTCATACATTTGATTATGCAAGGCACTTTCTTTCTTGCTGCAGCAGAATGTTGGGTCTGGACTATGAATCTAAGCGAGGACATATAGGACTTGATTACTTTGGCCGCACTATATTTATCAAAATTTTGCCTGTAGGCATTCACATGGGTAGGCTTGAATCTGTATTAAATCTACCTTCTACATCTGCTAAACTAAAAGAGATCCAGGAAGAGTTTAAGGGTAAGAAGGTGATTCTTGGTGTTGATGACATGGACATTTTCAAGGGCATCAGTCTGAAACTTCTAGCCATGGAGCAGCTGCTGCATCATAATCCAGATTTGCAGGGCAAAGTTGTCTTAGTTCAAATTGTAAATCCTGCAAGGGGTTCAGGGAAGGATGTTCATGAAGCAAAGAAGGAAACATATTTAATTGCCCGGAGGATCAATGGCACTTATGGTTCAGAGCATTATCAGCCTGTCATTCTCATTGACCGCCCTGTTCCCCGTTTTGAGAAGAGTGCCTATTATGCCGTAGCAGAATGTTGCATTGTGAATGCAGTAAGGGATGGCATGAACTTAGTCCCATACAAATATATTGTCTGCAGACAGGGAACTGCACAACTGGATGAAGCATTGGGTAGAAAAAGTGATTTTCCTCGAACAAGCATGCTTGTTGTGTCTGAGTTCATTGGTTGTTCACCTTCTCTGAGTGGGGCAATCAGGGTCAATCCCTGGGACATTGATGCTGTCGCTGATGCTCTGAATTTGGCCCTTACTATGAGTGATTCTGAGAAGCACTTGCGCCATGAGAAACACTATCGGTATGTCAGTTCTCATGATGTGGCATATTGGGCACGTAGCTTTATGCAGGATTTGGAGAGAGCCTGCAAAGATCATTACACCAAAAGGTGTTGGGGAATTGGTCTGGGTCTAGGGTTCAGAGTTGTTTCTCTTTCTCCTGGGTTTAGGAAGTTGTCCATTGATCATGTTCTTTCAGCTTACAAGAGAACTAGTAGAAGGGCCATCTTTCTTGATTATGATGGTACTGTTACACCACAGTCGTCTATAAATAAAATACCCAGCCCTGAAGTCATATCTGTGCTAAATGCTCTGTGTAATGATACAAAGAACATCGTCTTCATTGTTAGTGGCAGGGGAAGAGATTCTCTAAGTGAATGGTTTAGTTCATGCCAACTGCTGGGACTTGCTGCTGAACATGGTTACTTTTTAAGGTGGAGCAGAGATTCTGAATGGGAAACCAGTCACTTGTCAGCAGACCTTGAATGGAAAAATATAGTGGAACCTGTCATGCAGCTGTATACAGAGGCAACTGATGGCTCCAGTATTGAAACTAAGGAAAGTGCTTTGGTGTGGCATCATCAAGATGCAGACCCTGATTTTGGTTCTTGCCAAGCCAAGGAGTTGTTGGATCACTTGGAAAGCGTGCTTGCAAATGAACCAGCAGTTGTTAAGAGAGGCCAGCATATTGTTGAAGTTAAACCACAGGGAGTAAGCAAGGGTTTGGTAGCTGAAAAGGTTCTTTCAACCATGGTTAATGGTGGTAATCCACCAGATTTTGTTATGTGCATTGGAGATGATAGGTCTGATGAAGACATGTTTGAGACCATTTTAAGAACAGTCTCCTGCCCATCATTACCAGCAGCTCCGGCAATATTTGCCTGCACTGTGGGTAGGAAGCCTAGCAAGGCCAAATATTTTCTTGATGATACTGCTGATGTTGTAAAGTTGCTTCAGGGCCTTGCTACTTCATCCAATCCAAAGCCGAGGCACCTTGCTCAATTCCAGGTTTCTTTTGAGAGCACAATTTGA 2586 0.4246 MASRSYVNLLDLACGDLLDIPHTPRALPRIMTVPGIISDLDGYGCNDGDSDVSSSGCRERKIIVANMLPLQAKRDIQTAKWCFSLDEDSILLQLKDGFSSDTEVIYVGSLKVDIDASEQEEVAQRLMDDFNCVPTFLPHDLQRKFYLGFCKQQLWPLFHYMLPMCPDHGDRFDRVLWQAYVSANKIFADKVMEIINPDDDFVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNADLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMGRLESVLNLPSTSAKLKEIQEEFKGKKVILGVDDMDIFKGISLKLLAMEQLLHHNPDLQGKVVLVQIVNPARGSGKDVHEAKKETYLIARRINGTYGSEHYQPVILIDRPVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTAQLDEALGRKSDFPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALNLALTMSDSEKHLRHEKHYRYVSSHDVAYWARSFMQDLERACKDHYTKRCWGIGLGLGFRVVSLSPGFRKLSIDHVLSAYKRTSRRAIFLDYDGTVTPQSSINKIPSPEVISVLNALCNDTKNIVFIVSGRGRDSLSEWFSSCQLLGLAAEHGYFLRWSRDSEWETSHLSADLEWKNIVEPVMQLYTEATDGSSIETKESALVWHHQDADPDFGSCQAKELLDHLESVLANEPAVVKRGQHIVEVKPQGVSKGLVAEKVLSTMVNGGNPPDFVMCIGDDRSDEDMFETILRTVSCPSLPAAPAIFACTVGRKPSKAKYFLDDTADVVKLLQGLATSSNPKPRHLAQFQVSFESTI* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0040 861 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 549 - -
Dod04g0040 861 CDD GT20_TPS 60 545 IPR001830 GO:0003824|GO:0005992
Dod04g0040 861 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 1 852 - -
Dod04g0040 861 Gene3D Glycogen Phosphorylase B; 313 529 - -
Dod04g0040 861 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 593 794 IPR006379 -
Dod04g0040 861 CDD HAD_TPP 593 834 - -
Dod04g0040 861 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 852 IPR001830 GO:0003824|GO:0005992
Dod04g0040 861 Pfam Trehalose-phosphatase 595 829 IPR003337 GO:0003824|GO:0005992
Dod04g0040 861 SUPERFAMILY HAD-like 592 840 IPR036412 -
Dod04g0040 861 TIGRFAM T6PP: trehalose-phosphatase 590 840 IPR003337 GO:0003824|GO:0005992
Dod04g0040 861 Pfam Glycosyltransferase family 20 60 545 IPR001830 GO:0003824|GO:0005992
Dod04g0040 861 Gene3D Glycogen Phosphorylase B; 54 312 - -
Dod04g0040 861 Gene3D - 721 852 IPR023214 -
Dod04g0040 861 Gene3D - 591 707 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0040 Dod-Chr4 489805 495056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0040 1 861 Trehalose Biosynthesis Gene Families AT1G23870 76.613 0.0 1389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0040 K16055 - gmx:100775779 1598.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0040 04 489805 495056 Dod04g0040 04 489805 495056 ECH