Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0027 ATGGCTGGTGATGAACTGGCTAGCAGCTCTGAGTGGAGCTTTGAGCAGGATAAAGCATTTGAGAATGCCTTGGCTAATTACTCTGAGGATGATCCGGATCGATGGGAGAAGATTGCTTCTGATGTACCGGGGAAGACTTTGGAAGATGTTAAAAATCACTATGAGTTCTTGGTTGAGGATGTTAACCTGATTGAATCTGGCTGTGTAACTCTACCATCTTATAATTCTACTTCAGAGGGCTCAACAGGGAATGCAAGTGATGAAGGAGCTGGCAAGAAGGGTGGCCATCCTTGGAATTCTAACAGTGAGTCTAATCATGGATCTAAAGCTTCAAGATCAGATCAGGAACGACGAAAGGGCATTGCTTGGACAGAAGATGAACACAGGTTGTTTCTTCTTGGATTGGAGAAGTATGGAAAAGGTGACTGGCGAAGTATATCAAGGAACTTTGTGGTGACAAGAACACCTACACAAGTAGCAAGCCATGCCCAAAAATACTTCATTCGTTTGAACTCAATGAATAAAGATAGAAGGCGATCCAGCATACACGATATCACCAGCGTGAACAATGGAGACATTTCAGCACCTCAGGGACCAATTACTGGTCAAACAAATGGCTCTGCTGGAAATTCTACAGCAAAATCAGCCAAACAAGGCCCTCCAACCCCAACTGGGGCCCCAAGTGTGGGAATGTATGCTGCTCCTACCATTGGACAGCCTATAGGAGGACCTCTTGTATCTGCAGTTGGCACCCCGGTGAATCTTCCTCCCCCAGCACACATTGCTTACGGTGTCCGAGCCCCAGTACCTGGGGCTGTTGTTCCTGGTGCACCCATGAACATGGGTCCAGTGCCGTACCCCATGCCACCCACATCTGCTCATAGGTGA 888 0.4741 MAGDELASSSEWSFEQDKAFENALANYSEDDPDRWEKIASDVPGKTLEDVKNHYEFLVEDVNLIESGCVTLPSYNSTSEGSTGNASDEGAGKKGGHPWNSNSESNHGSKASRSDQERRKGIAWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDISAPQGPITGQTNGSAGNSTAKSAKQGPPTPTGAPSVGMYAAPTIGQPIGGPLVSAVGTPVNLPPPAHIAYGVRAPVPGAVVPGAPMNMGPVPYPMPPTSAHR* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0027 295 Gene3D - 10 57 - -
Dod04g0027 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 171 IPR017930 -
Dod04g0027 295 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
Dod04g0027 295 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Dod04g0027 295 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 119 169 IPR006447 GO:0003677
Dod04g0027 295 MobiDBLite consensus disorder prediction 74 119 - -
Dod04g0027 295 ProSiteProfiles SANT domain profile. 123 171 IPR017884 -
Dod04g0027 295 ProSiteProfiles Myb-like domain profile. 4 58 IPR001005 -
Dod04g0027 295 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
Dod04g0027 295 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 7 283 - -
Dod04g0027 295 SMART sant 119 169 IPR001005 -
Dod04g0027 295 SMART sant 8 60 IPR001005 -
Dod04g0027 295 MobiDBLite consensus disorder prediction 177 229 - -
Dod04g0027 295 PANTHER TRANSCRIPTION FACTOR KUA1 7 283 - -
Dod04g0027 295 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Dod04g0027 295 SUPERFAMILY Homeodomain-like 117 172 IPR009057 -
Dod04g0027 295 CDD SANT 122 167 IPR001005 -
Dod04g0027 295 CDD SANT 11 54 IPR001005 -
Dod04g0027 295 Gene3D - 121 173 - -
Dod04g0027 295 MobiDBLite consensus disorder prediction 184 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0027 Dod-Chr4 391551 399939 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod04g0027 Myb_DNA-binding 2.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0027 - - gmx:100820272 498.819