Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0014 ATGATTCTCACACGTTCTGCTTTGTTGCTCCATCTCCACAACCCCCAATTCTTCAACCATGCTCCCACCTTTCTCCGCAGCCCCACTTCATCTCCTCTCTTCAAAGCTCGCTTCTTTTCTCTCACCCCTCCACGCCAAACGCGAACCCCTGTTGCAGCAGCAGCAGCAGCAGCAGCATCATCATCATCATTACCGGAAGATTCAAAGGGCAGAGACACTTTTTTTGCTGAAGAAAACGTTTCGTGGAGCTCACTCGGTCTCTCTGATACCCTTTCTCGAGCTCTCTCTAACATTGGCCTCAAAAGACCCTCTTTCGTTCAGGCTTCTTCTGTACCATCTGTGCTGTCTGGAAAGGATGTGATTATTGCAGCGGAGACTGGCAGTGGTAAAACATACAGTTACTTAGTTCCTCTAATTGATAAGCTTAGGGACACCAAGGAACATTCTCCAAATACTGTATCTGATCAAGATGTGTCTCCGCCCCAGAAAGTTCTGCTTGTTCTTTGTCCAAATGTACAACTCTGTGAGCAGGTAGTTAGGATGGCTAGCAGTCTCTGCAGAGATACTGGTGAACCGATTGTTAGGGTGGCAGCAGTTTGTGGCAGACAGGGATGGCCAATTCATGAGCCTGATATCATTGTGACCACACCTGCTGCTCTTCTGAATTATGTTGACCCTGATAGAACCCGCCGCATGGAATTCATGCGTGGTGTTAAACATGTGGTGTTTGATGAGGCTGATATGCTTCTCTGCGGGAGTTTCCAGAATAAAGTTATCCGCCTGATAAATTTGCTTCGCTTTGATGAAAAGCTCTTGTCTCGTGCAAAAAAATCAGTAGGAGAGTTGACAGAGAAACCAGAATCTTCCTTGTCATTGCACGATGATTTGGAAGGAGAAGAGGAGCTTCCTACTGAAGCCACATCAGAAGAGGATGACAATACTCATCAGGATATTGCTGATATTAATAATGAAGCTGAATCCGTTAAACAAAGAGACTGGAAGAGAGTCAGGAAAATTTATGATCGCAGTAAGCAGTATATTTTTGTCGCAGCTACACTTCCAGTGAATGGAAAGAAAACAGCTGGAGCAATATTGAAACACATGTTTCCTGATGCTCAGTGGGTTAGTGGAAACTATCTTCATTGTCACAATCCAAGATTGGAGCAAAGATGGATCGAAGTTACGGTTGATACACAGGTGGATGAACTCATAAAGGCTGTGAGTCATGGTTTCGGGCCAGTAGATTTGGATAATGCTGGTAGCATTCGCAGAACAATGGTGTTTGCTAACACTGTTGAGGCTGTTGAAGCTGTGGCGAAGATATTGCTTCGATCTGGGATTGAATGTTTACGTTATCATAAGAATTGTACATTGGAGGAGCGAGCACAGACCTTGGTTGAATTTCAAGAGAAAGGTGGTGTTCTTGTATGTACTGATGCAGCTGCTCGTGGTGTTGATATTCCAAATGTTTTACATGTTATTCAGGCAGACTTTGCTACTTCTGCTGTTGACTTTTTGCATAGGGTTGGTCGTACAGCTAGAGCTGGTCAATTCGGACTCGTTACTAGCTTGTACACTGAATCCAACAGGGAGCTTGTTAATGCAGTTCGTCGAGCAGGAGAATGTGGTCAACCTGTGGAGACTGCATTTAGCAGGAAAAGAAGCTTCCGTAACAAGCTCAAAAAGAGGGGTGCTAACGAAGTCAGATATTCAGGGACTTCTAAAGAGAGCGTTGTAGCTTGA 1743 0.4469 MILTRSALLLHLHNPQFFNHAPTFLRSPTSSPLFKARFFSLTPPRQTRTPVAAAAAAAASSSSLPEDSKGRDTFFAEENVSWSSLGLSDTLSRALSNIGLKRPSFVQASSVPSVLSGKDVIIAAETGSGKTYSYLVPLIDKLRDTKEHSPNTVSDQDVSPPQKVLLVLCPNVQLCEQVVRMASSLCRDTGEPIVRVAAVCGRQGWPIHEPDIIVTTPAALLNYVDPDRTRRMEFMRGVKHVVFDEADMLLCGSFQNKVIRLINLLRFDEKLLSRAKKSVGELTEKPESSLSLHDDLEGEEELPTEATSEEDDNTHQDIADINNEAESVKQRDWKRVRKIYDRSKQYIFVAATLPVNGKKTAGAILKHMFPDAQWVSGNYLHCHNPRLEQRWIEVTVDTQVDELIKAVSHGFGPVDLDNAGSIRRTMVFANTVEAVEAVAKILLRSGIECLRYHKNCTLEERAQTLVEFQEKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRVGRTARAGQFGLVTSLYTESNRELVNAVRRAGECGQPVETAFSRKRSFRNKLKKRGANEVRYSGTSKESVVA* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0014 580 Pfam Helicase conserved C-terminal domain 423 516 IPR001650 -
Dod04g0014 580 SMART helicmild6 436 516 IPR001650 -
Dod04g0014 580 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 528 IPR027417 -
Dod04g0014 580 MobiDBLite consensus disorder prediction 283 297 - -
Dod04g0014 580 MobiDBLite consensus disorder prediction 283 324 - -
Dod04g0014 580 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 399 564 IPR001650 -
Dod04g0014 580 Gene3D - 394 578 IPR027417 -
Dod04g0014 580 CDD SF2_C_DEAD 387 525 - -
Dod04g0014 580 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 47 554 - -
Dod04g0014 580 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 47 554 - -
Dod04g0014 580 Gene3D - 52 369 IPR027417 -
Dod04g0014 580 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 371 IPR014001 -
Dod04g0014 580 SMART ultradead3 99 390 IPR014001 -
Dod04g0014 580 CDD DEADc 91 272 - -
Dod04g0014 580 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 80 108 IPR014014 GO:0003724
Dod04g0014 580 MobiDBLite consensus disorder prediction 308 324 - -
Dod04g0014 580 Pfam DEAD/DEAH box helicase 106 270 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0014 Dod-Chr4 253385 258768 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0014 330 541 Eukaryotic Initiation Factors Gene Family AT5G11200 27.572 5.67e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0014 - - gmx:100789323 883.634