Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0010 ATGGCAACTGGGTCGCATGAACTTCTGCGAGTTAGGCATGCTTCCGACACGGGGTCTAAACCCTTGAAGAATTCGAATGGTCAAATCTGTCAGATATGTGGTGATACGGTTGGATTAATATCTACTGGTGATGTATTTGTTGCTTGCCATGAGTGTGCCTTCCCACTTTGTCATCGCTGTTATGAATATGAGTGGAAAAATGGGAACCAATCTTGCCCCCAGTGCAGGACTAGATATGAAAGCCACAAAGAGAGTCCTTGTGTAGAGGGAGAAGACGATGATGATGATGTTGATGATCTAGAGAATGAGGTCAATTATGCCCATGGAAATAGTACCAAAGCGGCACTGCAATGGGAAGAAGATGCCGATCTCTCTTCATCATCTGGACATGATTCTCGCACACCAAATCCTCATATCACAAATGGGCAGCCGATGTCTGGTGAGATACCATGTGCTGCTTCTGATACACAATCTGTGCAAGCTACATCAGGTCCTCTAGGTCTTGAGAGTGATGAGGAGATCAGAAGAGTGCCAGAGATTGGAGGTGAATCTGCTGGAACTTCAGTCTCTCGTCCAGATGTTGGTTCAACTGCTGGGCAGGAACGTGCTCAGGGGACAGGGGACGGTCAAAGGAAGAGAGGGAGAAGCCCAGCTGACAAAGAAAGCAAGCGCCTAAAGAGGCTACTGAGGAATAGAGTTTCAGCTCAGCAAGCAAGGGAGAGGAAAAAGGCCTATTTGATTGATTTGGAAACAAGAGTGAAAGACTTGGAGAAGAAGAACTCAGAGCTCAAAGAGAGACTTTCCACTTTGCAGAATGAGAATCAAATGCTAAGACAAATATTGAAGAACACAACGGCAAGCAGGAGAGGCAGCAATAGTGGTACCAATGCTGAATAA 897 0.4604 MATGSHELLRVRHASDTGSKPLKNSNGQICQICGDTVGLISTGDVFVACHECAFPLCHRCYEYEWKNGNQSCPQCRTRYESHKESPCVEGEDDDDDVDDLENEVNYAHGNSTKAALQWEEDADLSSSSGHDSRTPNPHITNGQPMSGEIPCAASDTQSVQATSGPLGLESDEEIRRVPEIGGESAGTSVSRPDVGSTAGQERAQGTGDGQRKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQILKNTTASRRGSNSGTNAE* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0010 298 MobiDBLite consensus disorder prediction 206 240 - -
Dod04g0010 298 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 158 289 IPR044280 GO:0000981|GO:0045944
Dod04g0010 298 MobiDBLite consensus disorder prediction 1 20 - -
Dod04g0010 298 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 226 241 IPR004827 GO:0003700|GO:0006355
Dod04g0010 298 ProSiteProfiles Zinc finger RING-type profile. 30 76 IPR001841 -
Dod04g0010 298 MobiDBLite consensus disorder prediction 150 165 - -
Dod04g0010 298 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 158 289 - -
Dod04g0010 298 Coils Coil 218 287 - -
Dod04g0010 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 103 IPR013083 -
Dod04g0010 298 SMART brlzneu 219 283 IPR004827 GO:0003700|GO:0006355
Dod04g0010 298 MobiDBLite consensus disorder prediction 109 240 - -
Dod04g0010 298 MobiDBLite consensus disorder prediction 189 204 - -
Dod04g0010 298 Pfam Zinc-binding RING-finger 20 97 IPR027934 -
Dod04g0010 298 MobiDBLite consensus disorder prediction 128 143 - -
Dod04g0010 298 CDD bZIP_HY5-like 224 275 - -
Dod04g0010 298 SUPERFAMILY RING/U-box 14 102 - -
Dod04g0010 298 Gene3D Single helix bin 242 283 - -
Dod04g0010 298 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 221 284 IPR004827 GO:0003700|GO:0006355
Dod04g0010 298 SUPERFAMILY Leucine zipper domain 223 281 IPR046347 GO:0003700|GO:0006355
Dod04g0010 298 CDD mRING-HC-C4C4_CesA_plant 28 78 - -
Dod04g0010 298 Pfam bZIP transcription factor 220 281 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0010 Dod-Chr4 199522 205447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0010 167 280 bZIP Transcription Factor Family AT5G11260 75.652 1.06e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Dod04g0010 zf-UDP 9.6e-38 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0010 K10999 - aprc:113855639 489.189