Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0007 ATGCTCAAGTTGGATTTTAGCATCAACAACTTTTCAGGCAGTATTCCTCCTGAGATAGGTAACTGTGTCTTGCTCACTTATTTGGATTTGAGCCAAAACCAACTTTCAGGGCCCATCCCAGTTCAAGTTGCTCAAATTCATATACTGAACTATCTTAATGTCTCATGGAACCACCTAAACCAAAGCCTTCCTAGGGAACTGGGGGCCTTGAAGGGCTTAACAGCAGCAGATTTCTCGCACAATAACTTCTCTGGTTCAGTACCTGAGGTGGGACAATTCTCAGTCTTTAATTCTACATATTATGTTGGTATCCCTCAGCTATGTGGATATGACTTGAATCCGTGCAACCATTCTTCAACAGTGTCAATGGAGTCTCAGGAAAGGAACAGTGCAAAACCTGGGGTCCCTGGGAAGTTCAAGTTGCTTTTTGCATTGGCATTGTTGGGATGCTCATTGGTGTTTGCGGCACTGGCCATCTTCAAGAGTAGAAAAGCAAGGAGGCACTCCAATTCGTGGAAACTCACTGCATTCCAGAAGCTTGAATATGGAAGTGAGGAAATCATAGGGTGCATAAAGGAAAGCAATGTCATAGGAAGAGGAGGAGCTGGGATTGTATACAAAGGAACAATGCCAAATGGAGAGGAAGTAGCAGTTAAGAAGCTGTTGGGAATCAACAAAGGCTCTTCCCATGATAATGGCCTATCTGCAGAAATAAGGACATTGGGTAGGATCAGGCACAGATACATTGTGAGGTTGCTAGCATTTTGCTCAAACAGAGAGACCAATTTGCTTGTATATGAGTACATGCCAAATGGAAGCTTGGGTGAAGTCTTGCATGGGAAGAGGGGTGGTGAGCTTCTCAAGTGGGATAAGAGGCTCAAAATAGCCACAGAAGCTGCAAAAGGACTTTGTTATTTGCACCATGATTGTTCCCCTTTGATAATCCATAGAGATGTGAAGTCAAACAATATATTATTGAACTCTGATTTTGAGGCTCATGTTGCTGATTTTGGGCTTGCCAAGCTCATGCATGATACCTGGGACATCAGAGTGCATGTCTTCCATTGCTGGTTCTTATGGCTATATAGCTCCAGAATATGCGTACACATTGAAAGTGGACGAGAAAAGTGA 1131 0.4332 MLKLDFSINNFSGSIPPEIGNCVLLTYLDLSQNQLSGPIPVQVAQIHILNYLNVSWNHLNQSLPRELGALKGLTAADFSHNNFSGSVPEVGQFSVFNSTYYVGIPQLCGYDLNPCNHSSTVSMESQERNSAKPGVPGKFKLLFALALLGCSLVFAALAIFKSRKARRHSNSWKLTAFQKLEYGSEEIIGCIKESNVIGRGGAGIVYKGTMPNGEEVAVKKLLGINKGSSHDNGLSAEIRTLGRIRHRYIVRLLAFCSNRETNLLVYEYMPNGSLGEVLHGKRGGELLKWDKRLKIATEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSDFEAHVADFGLAKLMHDTWDIRVHVFHCWFLWLYSSRICVHIESGREK* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0007 376 SUPERFAMILY Protein kinase-like (PK-like) 185 351 IPR011009 -
Dod04g0007 376 SMART serkin_6 191 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g0007 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672|GO:0006468
Dod04g0007 376 ProSiteProfiles Protein kinase domain profile. 191 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g0007 376 Gene3D Transferase(Phosphotransferase) domain 1 269 355 - -
Dod04g0007 376 SUPERFAMILY L domain-like 4 112 - -
Dod04g0007 376 Pfam Protein kinase domain 193 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g0007 376 Gene3D Ribonuclease Inhibitor 1 123 IPR032675 -
Dod04g0007 376 Gene3D Phosphorylase Kinase; domain 1 161 268 - -
Dod04g0007 376 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 1 346 - -
Dod04g0007 376 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0007 Dod-Chr4 186436 188605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0007 4 94 Receptor kinase-like Gene Family AT5G65700 33.333 4.50e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dod04g0007 Pkinase 7.9e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0007 - - gmx:100803075 604.364