Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3378 ATGATGGAGTTTGTGGGCAAAACGGTGAAGAAGGAGGTGAAGGGTGGTGGGTTTATCAACGGAACGGTGACATCCTACGACCCTTCTTCTGGTTTCGTTGAGATCCTCTATGAGGATGGAGATTCTGAGGAGCTGGAATCAAACGACGTCGTTTCGGTGCTTGAAGAAGAAGAAGCTGATGCTCAGCCGGAGCCAGCTAAGGCCAAGCCTCGGGTCGGTCGGAAGCCCAAGAAGCGCCGCCGTGTCGAGCGGAAAGTCCGGACCGGAGCGAGTTCAGGTAACGGTAGTGAGAGTATGGTTTTGGAGGGTAGTGAATTTAGGGTGAATTCTGGAGGGAATGGTTCTGGTGGTGATGGGAATTTAGGGTTAGAGAATGGTGAGTTAGGTTTTGGTGCTGGGAATAATGGGAATGGAGGGAATCTTGCTGGCAATGTGAATGGTAGTGTGGATTCAATTGTTGGGAGTGATGGAACTATAGGGAGGGGAATTGGGGTTGATGGGGATTTCAATAAGGGTGTTGTAGCTGTTAATAATGAGAATTGTCTTAGGGATGGGATTGATTTGAATGCTGGTATTATTAACTTGAATGAGGATTTGAATAATCTGAATGATGATGGGTCTGGTTTGTTGCCTGTTGAAGGCACTAAGGTTGGATTGAAGAGAAGGGATTGTATTGATTTGAATTTGGATGTGAGTAATGAGGATGATGTGAGCATGAATGTGGGTGCTTTGGGAGGGGGGAGTTTGCAGCGGGAATGTATTTTTGATTTGAATGTGGATGTGTGTGAAGAAGTCAAGGAAGGTCAGGGTGATGCTGATGGGAATGGATGTTATGAGGCAAATGCTATGGTGGGTGAGATGGGTGGTCAACCCCTTGGGGACGTGGCAAATGTTGATCAGAGGTCTATAGAAGGTGATGGTGTTCGTAGTGATTTGAATGAGGTGTGTGATGTTATCGATTTGGAGGTAAATGATGTTTCTGCCAAGCATGTTGCTTCAGATGCCTCTTTGTGTTTGGTTGAGGGAAAGGAAGGTGATAACGGAGGAGATGTGGCAGCTATTGACTTTCTTGAGGTTTCAAATGCTGTTTCTGTGGAAGCTCAGCAAATGGATAGTCCTTCCGAAGCTGGTTTTGCTGTAGCTCATGAAGACCAGGATGAGCCAGGCAAACGAGGACGTGGTCGAAGGAAGAAAAGAAGAATTTCAGAAAATCTGATGACTACCCCGGAGACAGGTTTAAGGAGGAGTACTCGCCGGGCATCGGCTAGAAAACAGGCTTCAAGCACCATTACAACCCATTTGATGGATGATCCTATGTTGGTGGAACCCAGTACCTCAACAGAAGAAAACCCTGTAATCTCTGCTTATGAGGAGCAACACAATGCTCTTCAACCGAAGCTGCAACTGCCCCCTTCTTCTCAAAATTTGAATTTAGATGATGTTCCTGTTCTTGAAGTCTTTTCTATTTATGCTTGTTTAAGATCATTCAGTACTTTATTATTTTTGAGTCCCTTTGAGTTGGAGGATCTCGTAGCCGCACTCAAGTCTGACACCCCCAGTGTATTATTTGACAATATTCATGTTTCTGTTTTAGAAACTCTGAGAAAGCATTTGGAATACCTTTCCAATGAGGGTTGCCAATCTGCATCTGATTGCCTGAGGAATCTTAACTGGGATTTGTTGGATGTGCTCACATGGCCCATTTTCATGGCCGAGTACCTTCTGATCCATGATTCAGGATTTAAAACTGGTTTCAATCCTGACCAGTCAATGTTTACAACTGACTACTACAAACAGCCTATAAGTGTGAAGGTTCAGATTCTTCAGTACCTCTGTGATGATATGATTGAAGCAGAAGCAATAAGGTCAGAGCTTAACAGAAGATCGATGGTTACTGAGAACAGTATGGGTTTTGATCAGAATATGTATTTTGACACTAACAAGAAAAGAAGACCAGTAACAGATGTGTCTGGTGGCTCTTGCTTGACTGAGGACATTGTGGATGACGCAACTGACTGCAATAGTGATGAATGCTGCCTTTGCAAGATGGATGGTAAATTAATATGCTGTGATGGTTGCCCCGCTGCTTTCCACTCCAGGTGTGTTGGAGTTGCTAGTGACACTCTGCCTGAGGGGGACTGGTATTGCCCTGAGTGTGCAATTGGTGCACACAGAGCATGGATGAAATCACGAAGGTCACTTCGAGGAGCAGATTTGATAGGGACTGATATTCATGGACGTCAGTATTATAACAGCTATGGTTACCTGTTAGTGTCAGACTCATCTGATACAGGGTCCTTGTTCAATTACTACCACAGAAATGATTTGCATGTAGTAATTGGTGTTCTAAAAACTATGGATACTTTATACAGAGGCATATTAATGGCTATCTGCAAGCACTGGGATATCCCTGCTAACTCAAGTGTGGAGGCTAGTAACTTGGTTGGCTTTAATCAACGCTCCAATAAAAACATGCATAAGAAGGGAGAATATTCTGCTAGGCAGACATCCTTAGCACCTTTTACTTCTTCAGAAACATGCTTGGAGAATAATCGGGTGGATCATGAAAGAAAGATAGATGAAAATTCTACTATTGACTGTTGTACTCATCCTGGCCAAGAGTTTCCAAAAGCTGGGAATCGCTTAGATTCAACAACTACTATAGAAAGTCCTTGTGCTGCTTCAGAAGGATCAGCCGATACCACACAAGTGAGATCAGGCATTGAGAATGTTCAAATGAATGGGCTTTATGATTCAAACAGATGTGATGAATCCTTGAATCAGTCAGGAATACCAGAAAAACACCATCCAGTCGGTGATTGTTCTTTGGCATCCTCCAGCTTAGAAGTGGGACATAAGATGAACTTGAGATCTGTGGGTGCTAGCTGTGCCCACTTGACTGACGATAAGAATACTTCAGAAGTTCCTTTGGGAATTGACTACATAAACTATTACAGCTTTGCCCGGACAGCCTCATTAGTTGCACAGGAGTTGATGTGTAAATCGCCTGAAAAGATAAATAAGAATTTGGTAATGTCTGAAGAAGACATAATGTCAGACCAAGCAAAGGCCATTATGAAGAAATCTACAAACTTTTGCTGGCCAAGTATTCAAAACCTGAATGCAGCTGCCCAAAAGGAAAAATGTGGGTGGTGCTTTTCTTGCAAAGCTGAAAATGATGACAGGGATTGCTTGTTTATTTCTGTGATGAAACCTGTTTGGGAAGTGTCTGAAAGTACTTTTGTTGGGCTTCAGCCCATGAAGATCCAGAATGGACATCTTAGAGATATCATATGTCACATTCTCTCCCTTGAGGATCGATTGCGTGGGCTTTTGTTGGGTCCATGGTTGAATTCACATCAAACAAATTTGTGGCATAAGGATCTTATGAAGACATCTGATCTTCTTCCTGTCAAACGATTACTTCTTCTTTTAGAATCCAATTTGCGGCCTTTTGCTCTTTCAGCGGATTGGTTAAAGCATGTGGATTCTATAGGTACCATGGGATCAGCTACTCATATTGTGGTGAGTTCACGCACATCTTCGAGACATGGTATTGGGAAGAAGAGGGCTAGATATTCAGATATTGAACCCAATTCATCTTCAAGCACCACAAGTGGTTTGGGAATATATTGGTGGAGAGGTGGTAGGCTTTCCCGACAATTGTTTAATTGCAAGAATTTGCCTCGCACTTTGGTTACCAAGGCTGCTAGGAAAGGGTGCACAAAGATACCAGGCATTTTATATCCTGAGAATTCAGATTTTGCAAGGCGAAGCAAGTATGTTGCCTGGCGAGCTGCTGTGGAGGTGTCAACAAGTGTTGATCAGCTTGCTTTACAGGTTAGAGAGCTTTATTCAAACATAAGGTGGCGTGATATAGAGAATAACCATCCTCCATATGTATTGGACAAGGAATCTAGAAAATCAGTCAGACTGTTCAAGAAAGCAATTGTACGGAGGAAGTGCGCTGAAGGGCAATCCGTGAAGTACCTTCTTGATTTTGGGAAGAGAAGGGCTATTCCGGATGTTGTTATCAGACATGGTTCTTTGTTGGAAGAATCCTCGAGTGAGAGGAAGAAATACTGGCTGGATGAGTCTTATGTTCCCTTGCATCTTTTAAAGAATTTTGAAGAAAAAAGAGTTGCTCGGAAGTTTGATGAAAAGAAACCTGGGAAGATTCTTGGGATTGGTGTCAATAGAAAGGACCCACAACAAAGAGGATTTTCATATTTGTTTTCTAGAATGGAAAGATCTGATTATCATCTGTGTGGGCATTGCAGCAAAGATGTTCCAATCAGGGATGCTGTGAGCTGCATTTATTGCAAAGGATATTTCCATAAGAGGCATGTCAGGAAATGTAGCGGCTCACTTGCTACTGAATGCACATATTCATGTCACAGATGCCTGGGTGGGACCCGTGTAAAGACTAATACTACTACAAATAGAAGGAAAGTTGAAACAAAACTGCAGAAGGTTCAATCACGGAAATGTAAAGATGGCTCCTCAGTTTCTAAATCAGTGAACCCTAATAAAAAGGCATTGAGTAAGGTGTGGAAGGTAAAATCTCGAACTAATAAGAAGATCCCATCAAGTGTACCTCTTCGTCGTTCTGCTAGGAAGACCAAATCCTTGTATATGCACAGTCAATTAAATGGAGGGCGTAAAAAAGGAATTCAAGTTAAAAAGAATGCTGGACGCAAAAAAGGGAAGCAAAGTAAATCCAAGAAGGTGAACAATCAGAGGCCCAAGGAAACTGCTGCTCAGCGTAAGAAGTTTGCTGTAACTACTGTGAGTAAGAAAAGAACAAACATCTGTAGCAGTTACTGGCTTAATGGTCTGTGGTTTTCTAGAAAGGCGAATGATGAACGAGTAATACTCTTTAGGGATAAAAAGCATGTTGCCTCCTCTGAAGATTTTTCTTCTGCCCTTGATCATCCTAAATGCTGTCTTTGTTCCGGAGATGGATGCACTTTAAATTATATTGCTTGTGAAATCTGTGGAGATTGGTTTCATGGGGATGCTTTTGGGCTCACTGTAGAAAACTCTAGCCAACTTATTGGATTCAAATGCCATGTCTGCCGTGGTAGAGCTGCCCCGATCTGCCCCCATATGAAGAGTAAAGCATTGTCACTCGCTGAATGCAATGCTGCAACTGAGTGTGCTGAGGAATTATCAAATCCTGTATCCCTCCAACCTCTGAGTGAGGTCTGA 5211 0.4277 MMEFVGKTVKKEVKGGGFINGTVTSYDPSSGFVEILYEDGDSEELESNDVVSVLEEEEADAQPEPAKAKPRVGRKPKKRRRVERKVRTGASSGNGSESMVLEGSEFRVNSGGNGSGGDGNLGLENGELGFGAGNNGNGGNLAGNVNGSVDSIVGSDGTIGRGIGVDGDFNKGVVAVNNENCLRDGIDLNAGIINLNEDLNNLNDDGSGLLPVEGTKVGLKRRDCIDLNLDVSNEDDVSMNVGALGGGSLQRECIFDLNVDVCEEVKEGQGDADGNGCYEANAMVGEMGGQPLGDVANVDQRSIEGDGVRSDLNEVCDVIDLEVNDVSAKHVASDASLCLVEGKEGDNGGDVAAIDFLEVSNAVSVEAQQMDSPSEAGFAVAHEDQDEPGKRGRGRRKKRRISENLMTTPETGLRRSTRRASARKQASSTITTHLMDDPMLVEPSTSTEENPVISAYEEQHNALQPKLQLPPSSQNLNLDDVPVLEVFSIYACLRSFSTLLFLSPFELEDLVAALKSDTPSVLFDNIHVSVLETLRKHLEYLSNEGCQSASDCLRNLNWDLLDVLTWPIFMAEYLLIHDSGFKTGFNPDQSMFTTDYYKQPISVKVQILQYLCDDMIEAEAIRSELNRRSMVTENSMGFDQNMYFDTNKKRRPVTDVSGGSCLTEDIVDDATDCNSDECCLCKMDGKLICCDGCPAAFHSRCVGVASDTLPEGDWYCPECAIGAHRAWMKSRRSLRGADLIGTDIHGRQYYNSYGYLLVSDSSDTGSLFNYYHRNDLHVVIGVLKTMDTLYRGILMAICKHWDIPANSSVEASNLVGFNQRSNKNMHKKGEYSARQTSLAPFTSSETCLENNRVDHERKIDENSTIDCCTHPGQEFPKAGNRLDSTTTIESPCAASEGSADTTQVRSGIENVQMNGLYDSNRCDESLNQSGIPEKHHPVGDCSLASSSLEVGHKMNLRSVGASCAHLTDDKNTSEVPLGIDYINYYSFARTASLVAQELMCKSPEKINKNLVMSEEDIMSDQAKAIMKKSTNFCWPSIQNLNAAAQKEKCGWCFSCKAENDDRDCLFISVMKPVWEVSESTFVGLQPMKIQNGHLRDIICHILSLEDRLRGLLLGPWLNSHQTNLWHKDLMKTSDLLPVKRLLLLLESNLRPFALSADWLKHVDSIGTMGSATHIVVSSRTSSRHGIGKKRARYSDIEPNSSSSTTSGLGIYWWRGGRLSRQLFNCKNLPRTLVTKAARKGCTKIPGILYPENSDFARRSKYVAWRAAVEVSTSVDQLALQVRELYSNIRWRDIENNHPPYVLDKESRKSVRLFKKAIVRRKCAEGQSVKYLLDFGKRRAIPDVVIRHGSLLEESSSERKKYWLDESYVPLHLLKNFEEKRVARKFDEKKPGKILGIGVNRKDPQQRGFSYLFSRMERSDYHLCGHCSKDVPIRDAVSCIYCKGYFHKRHVRKCSGSLATECTYSCHRCLGGTRVKTNTTTNRRKVETKLQKVQSRKCKDGSSVSKSVNPNKKALSKVWKVKSRTNKKIPSSVPLRRSARKTKSLYMHSQLNGGRKKGIQVKKNAGRKKGKQSKSKKVNNQRPKETAAQRKKFAVTTVSKKRTNICSSYWLNGLWFSRKANDERVILFRDKKHVASSEDFSSALDHPKCCLCSGDGCTLNYIACEICGDWFHGDAFGLTVENSSQLIGFKCHVCRGRAAPICPHMKSKALSLAECNAATECAEELSNPVSLQPLSEV* 1737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3378 1736 MobiDBLite consensus disorder prediction 1486 1592 - -
Dod03g3378 1736 Pfam DDT domain 485 536 IPR018501 -
Dod03g3378 1736 Gene3D - 4 53 - -
Dod03g3378 1736 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1640 1700 IPR013083 -
Dod03g3378 1736 PANTHER PHD FINGER FAMILY PROTEIN 2 1711 - -
Dod03g3378 1736 SUPERFAMILY FYVE/PHD zinc finger 1636 1696 IPR011011 -
Dod03g3378 1736 ProSitePatterns Zinc finger PHD-type signature. 678 719 IPR019786 -
Dod03g3378 1736 MobiDBLite consensus disorder prediction 53 98 - -
Dod03g3378 1736 MobiDBLite consensus disorder prediction 1496 1511 - -
Dod03g3378 1736 Pfam PHD-finger 678 720 IPR019787 -
Dod03g3378 1736 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 666 742 IPR013083 -
Dod03g3378 1736 PANTHER PHD-FINGER AND DNA BINDING DOMAIN-CONTAINING PROTEIN 2 1711 - -
Dod03g3378 1736 MobiDBLite consensus disorder prediction 71 85 - -
Dod03g3378 1736 SUPERFAMILY FYVE/PHD zinc finger 648 720 IPR011011 -
Dod03g3378 1736 MobiDBLite consensus disorder prediction 1559 1576 - -
Dod03g3378 1736 MobiDBLite consensus disorder prediction 372 428 - -
Dod03g3378 1736 ProSiteProfiles Zinc finger PHD-type profile. 675 722 IPR019787 -
Dod03g3378 1736 Coils Coil 1733 1736 - -
Dod03g3378 1736 ProSiteProfiles DDT domain profile. 480 540 IPR018501 -
Dod03g3378 1736 SMART testlast3 480 540 IPR018501 -
Dod03g3378 1736 SMART PHD_3 1647 1694 IPR001965 -
Dod03g3378 1736 SMART PHD_3 677 720 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3378 Dod-Chr3 66457460 66474750 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3378 2 1712 PHD Transcription Factor Family AT5G12400 40.388 0.0 1089
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Dod03g3378 DDT 2.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3378 - - gmx:100800973 2254.94