Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3366 ATGACCTCGCCGGAGGCGAATCCTCCTACCGCCGCCGCCGATGACGAGCCTTCCTTCAAGCGAGCCAACTTCTCCACCGACAAGTCACCGGTTGCGGAAGGCGATGACGATCAACAGCAAGCCTTCGAAGCCGCCGTCGGTTCCGGCGACGGCGGCGAGGAATCCACCGGTCTGAAGCTCCTAGGCCTCCTCCTCCAATGCGCGGAGTGCGTCGCCATGGACAACCTCGACTTCGCGAACGACCTCCTCCCGGAGATCGCGGAGCTCTCGTCGCCGTTCGGGACCTCGCCGGAGCGCGTCGGCGCGTACTTCGCACAGGCGCTCCAGGCACGCGTGATGAGTTCCTGCCTCGGCGCGTACTCCGCTCTCACCGCGAAATCAGTAACTCTAACTCAGTCTCAGCGGATCTTCAGCGCCTTCCAATCCTACAACTCGGTCTCCCCTCTCGTGAAGTTCTCTCACTTCACCGCGAACCAGGCAATCTTCCAAGCACTCGACGGCGAGGATCGCGTCCACATCATCGACCTCGACATCATGCAAGGCCTCCAATGGCCAGGCCTCTTCCACATCCTCGTCCTCTCGATCCCGAAAGATCCGCTCCGTTCGGATCACCGGATTCGGCTCCTCCTCCGAGCTCCTCGACTCCACCGGAAGACGACTCGCCGATTTTGCGAGTTCACTCGGTCTTCCCTTCGAGTTCCACCCGGTGGAAGGGAAAATCGGGAGCGTAACGGAACCGAGTCAACTCGGTGTTCGTCCCAACGAGGCTATTGTCGTGCACTGGATGCACCATTGCCTCTACGACATAACCGGGAGCGATTTAGGGACGTTGAGATTGCTGACTCAGCTGAGGCCGAAACTGATCACGACCGGGACGGGTTGGGTGCGGACAGTTTGGAGAGGCACACGGTGGAGCAGCAGCTGTTGGGCTGCGAGATCAGGAACATCGTGGCCGTTGGAGGGCCCAAGAGGACGGGAGAGGTTAAAGTTGAACGGTGGGGGGATGAGTTGAGACGGGTCGGGTTTCGACCCGTTTCGCTGCGGGGCAACCCGGCAGCGCAGGCTAGCTTGCTTCTAGGGATGTTCCCTTGGAGAGGGTATACCCTCGTGGAGGAAAACGGTTCACTCAAGCTTGGGTGGAAGGACCTTTCCCTCTTGACCGCATCGGCTTGGCAACCGTCCGATTTGATTACTTACCCTGATTGA 1206 0.6012 MTSPEANPPTAAADDEPSFKRANFSTDKSPVAEGDDDQQQAFEAAVGSGDGGEESTGLKLLGLLLQCAECVAMDNLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVMSSCLGAYSALTAKSVTLTQSQRIFSAFQSYNSVSPLVKFSHFTANQAIFQALDGEDRVHIIDLDIMQGLQWPGLFHILVLSIPKDPLRSDHRIRLLLRAPRLHRKTTRRFCEFTRSSLRVPPGGRENRERNGTESTRCSSQRGYCRALDAPLPLRHNRERFRDVEIADSAEAETDHDRDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWGDELRRVGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLTASAWQPSDLITYPD* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3366 401 ProSiteProfiles GRAS family profile. 51 392 IPR005202 -
Dod03g3366 401 MobiDBLite consensus disorder prediction 1 51 - -
Dod03g3366 401 PANTHER SCARECROW-LIKE PROTEIN 23 50 229 - -
Dod03g3366 401 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 50 229 IPR005202 -
Dod03g3366 401 Pfam GRAS domain family 62 193 IPR005202 -
Dod03g3366 401 Pfam GRAS domain family 293 392 IPR005202 -
Dod03g3366 401 PANTHER SCARECROW-LIKE PROTEIN 23 285 393 - -
Dod03g3366 401 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 285 393 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3366 Dod-Chr3 66326879 66328172 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3366 55 395 GRAS Transcription Factor Family AT5G41920 54.354 6.65e-111 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dod03g3366 GRAS 5.5e-43 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3366 - - gmx:100816249 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g3366 03 66326879 66328172 Dod03g3366 03 66326879 66328172 ECH