Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3364 ATGGCTTTCTTTCTTTGCTTCCTCTTCTTCCACCTTGCTTCATCTGCCTTTGCTTGTGATCGTTGCGTCCACCAATCCAAGGCTTCCTATTTCTCGAAAGCTTCTGGCCTTTCACCTGGGGCATGTGGGTATGGTGAGTTGGCTTTAGGCTTAAGTGGTGGACACCTTGCAGCTGGTGTGCTTCCCCTCTTCAAAGATGGAGCCGGTTGTGGTGCCTGCTTTCAGATAAGATGCAAGGACCAAACTCTTTGCACAAAAGAAGGTACCAGAGTAGTGTTGACTGATGTAAATAAGGATAATCAAACTGACTTTGTCCTCAGCAGCAGAGCCTTTGAGTCCATGGCTCAGAAGGGTAAGGGCCAGCAAATTTTGAAACTTGGAGTTGTTGACATTGAATATAAGAGCAGGGTACCTTGTGAATACAAAAGTAAGAATCTGGCAGTCCGCGTTGAAGAATCGAGCAAGAAACCAGATTACTTAGCAATCAAATTCTTGTATCAAGGGGGTCAAACAGAGATAGTGGGCGTTGATGTAGCTCCGGCTGGTTCTTCAAATTGGAGTTTCATGAGCAGAAACCATGGGGCAGTGTGGGACACAAGCAGGGTTCCAGAAGGGGCATTGCAATTGCGGCTAGTGGTAACAGCAGGGTATGATGGGAAATGGATTTGGGCACAGAAGGTGCTTCCTGTTGATTGGAAGACTGGGGTGGTGTATGACTCTGGCGTTCAGATCACTGACATCGCTCAAGAGGGATGCCCCAAATGCGATGATGGGCCCTGGCCATGA 786 0.4796 MAFFLCFLFFHLASSAFACDRCVHQSKASYFSKASGLSPGACGYGELALGLSGGHLAAGVLPLFKDGAGCGACFQIRCKDQTLCTKEGTRVVLTDVNKDNQTDFVLSSRAFESMAQKGKGQQILKLGVVDIEYKSRVPCEYKSKNLAVRVEESSKKPDYLAIKFLYQGGQTEIVGVDVAPAGSSNWSFMSRNHGAVWDTSRVPEGALQLRLVVTAGYDGKWIWAQKVLPVDWKTGVVYDSGVQITDIAQEGCPKCDDGPWP* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3364 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 240 IPR007117 -
Dod03g3364 261 PANTHER EXPANSIN-B3 5 257 - -
Dod03g3364 261 Pfam Expansin C-terminal domain 147 229 IPR007117 -
Dod03g3364 261 SUPERFAMILY PHL pollen allergen 144 240 IPR036749 -
Dod03g3364 261 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Dod03g3364 261 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Dod03g3364 261 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Dod03g3364 261 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Dod03g3364 261 SMART dpbb_1 57 133 IPR007112 -
Dod03g3364 261 PANTHER EXPANSIN-LIKE A1-RELATED 5 257 - -
Dod03g3364 261 Gene3D - 12 140 IPR036908 -
Dod03g3364 261 SUPERFAMILY Barwin-like endoglucanases 8 142 IPR036908 -
Dod03g3364 261 PRINTS Major pollen allergen Lol pI signature 149 164 IPR005795 GO:0005576|GO:0019953
Dod03g3364 261 PRINTS Major pollen allergen Lol pI signature 58 69 IPR005795 GO:0005576|GO:0019953
Dod03g3364 261 PRINTS Major pollen allergen Lol pI signature 115 130 IPR005795 GO:0005576|GO:0019953
Dod03g3364 261 PRINTS Major pollen allergen Lol pI signature 165 180 IPR005795 GO:0005576|GO:0019953
Dod03g3364 261 PRINTS Major pollen allergen Lol pI signature 216 233 IPR005795 GO:0005576|GO:0019953
Dod03g3364 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 144 IPR007112 -
Dod03g3364 261 Pfam Lytic transglycolase 57 133 IPR009009 -
Dod03g3364 261 Gene3D - 141 245 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3364 Dod-Chr3 66283325 66285352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3364 3 255 Expansin Gene Family AT3G45960 61.176 1.35e-106 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3364 - - gmx:100819849 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g3364 03 66283325 66285352 Dod03g3364 03 66283325 66285352 ECH