Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3345 ATGGATTGTACAGCTGCAAGAAAGACTCAAAAGGCTGATCGAGAAAAGTTAAGGAGAGATCGACTTAATGAACAGTTTGTAGAGCTGGGTAACGTGTTAGATCCTGATAGGCCCAAGAATGACAAAGCAACCATTCTTAGTGATACAATTCAATTGCTGAAGGATCTTACTTCTCAAGTTAGTAAACTCAAAGACGAATATGCTGCACTAAATGAAGAATCTCGAGAGTTGTCTCAGGAGAAAAATGATCTCAGGGAAGAGAAGGCTTCTCTCAAATCAGATATTGAGAACTTGAATAATCAGTATCAGCAGCGACTCAGGACTATGTTCCCATGGACTGCAATGGATCATTCGGTTATGATGGCTCCACCATCGTATCCATATCCGATGCCAATGGCAGTCCCTCCTGGTCCAATTCCCATGCAGCCATACCCTTTCTTTGCAAATCAAAATCCTGCAGTCATCCCTAACCCGTGTTCAACATTTGTTCCTTATTTAGCCCCCAATACCCTTGTTGAACAGCAATCCACCCATTATGTATCCCCGCCGCTCCATCCTGGTTGTCGTTCCCATGCATCAGGCAAACAAGACTCCAGAAACAAATCAAGCAGGGAGAGCAAAGCAGAAAAATGTGATGCTTCAATTGAGGTCACTACAGACCTTGAGTTGAAGACTCCTGGGTCTTCTGCAGATCAGGACTTGTCATCTGGACAAAGGAAATGCAGCAAGTCGTCGAGGAGGGGAAGCAGTTGCACGGAAGGGAGTTCGTTAGGTAGGTGTTCGTCATCTCATAGCGTTCAGGATAGCTCATCAAGTAGTGTAGGTGGCAGCAGAAAGGCCAACGAATGA 849 0.4499 MDCTAARKTQKADREKLRRDRLNEQFVELGNVLDPDRPKNDKATILSDTIQLLKDLTSQVSKLKDEYAALNEESRELSQEKNDLREEKASLKSDIENLNNQYQQRLRTMFPWTAMDHSVMMAPPSYPYPMPMAVPPGPIPMQPYPFFANQNPAVIPNPCSTFVPYLAPNTLVEQQSTHYVSPPLHPGCRSHASGKQDSRNKSSRESKAEKCDASIEVTTDLELKTPGSSADQDLSSGQRKCSKSSRRGSSCTEGSSLGRCSSSHSVQDSSSSSVGGSRKANE* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3345 282 PANTHER TRANSCRIPTION FACTOR BHLH121 1 281 IPR044579 GO:0003700|GO:0055072
Dod03g3345 282 Coils Coil 5 25 - -
Dod03g3345 282 MobiDBLite consensus disorder prediction 192 217 - -
Dod03g3345 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 75 IPR036638 GO:0046983
Dod03g3345 282 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Dod03g3345 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Dod03g3345 282 SMART finulus 12 62 IPR011598 GO:0046983
Dod03g3345 282 CDD bHLH_AtILR3_like 11 85 - -
Dod03g3345 282 MobiDBLite consensus disorder prediction 179 282 - -
Dod03g3345 282 Coils Coil 46 108 - -
Dod03g3345 282 Gene3D - 4 84 IPR036638 GO:0046983
Dod03g3345 282 PANTHER TRANSCRIPTION FACTOR BHLH121 1 281 - -
Dod03g3345 282 MobiDBLite consensus disorder prediction 221 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3345 Dod-Chr3 66116912 66119738 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3345 1 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 67.782 7.71e-100 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod03g3345 HLH 6.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3345 - - cam:101491902 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g3345 03 66116912 66119738 Dod03g3345 03 66116912 66119738 ECH
Dod03g3345 03 66116912 66119738 Dod02g0464 02 6121458 6124007 ECH