Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3339 ATGGGTGTTTCCAGATGTGGAAGAAGAAGGAGGAAAACAAGGGCAAAGAATTCAATTTCTCGGTCACCACCAGGCAGTCATATCTCGTGTAAAGAGGGCAGTAAATTTGATTTTACTGATCTAGAATGGACCACTAAGATTCCAGAGTGTCCAGTGTTCCACCCTTCAGAGCAAGAGTTCCAGAACCCTTTGCTATATCTACACAAGATTGCTCCTGAGGCATCTAAATTTGGAATATGCAAAATTGTTTCCCCTATAATTGCCTCTGTTCCCGCTGATGTTGTCTTAACAAAAGAGAAGAAGGGCTTCAAGTTTGAGACTAATGTACAGCCTCTTTGGCTTGCTGAATGGAATGAGAAAGACATAATTACCTTTACTATGAGAGGAAGAAAATACACATACCATGAATTTGAGGCTTTAGCAAACAAGGGCTTTCTCAATAGATTTTGCAGTTCTGAAGGTCTTTCTTCCTCGTATGTGGAAAAGGAGTTCTGGCGTGAGATGGCAAGTGGAGAGAAGAGAACGGTTGAGTATGGAGTCAATATTGAGGGTAGTGCCTTTTCATGTCATCCTAATGACAAACTTGGAAAAAGCAAATGGAATTTGAAGAATTTTTCGCGGCTGCCGGAATCCACGTTAAGATTAGTTGACAAGGAAATTCCAGGAATAACTGATCCTATGCTTTACATTGGAATGCTGTTCAGCATGTTTGCATGGCATGTAGAAGATCACTATCTGTACAGCATAAACTATCACCATTCAGGTGCAAATAAAATTTGGTACGGTGTGCCTGCCCATGCAGCCTCTCAATTCGAAAATGTTGTCCTGCATCATGCGTATAGCAATAAAATCATGTCAAAGCATGGAGAGGATGGGGCTTTCTTGCTTCTTGCACATAAAACAACCATGTTCCCTCCAAATATATTGCTAGAACATGATGTGGCTGTTTGCAAGGCTGTGCAGAAGCCAGGGGAGTTTGTCATCACCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGATTCAACTGCGGGGAAGCAGTGAACTTTGCTATTGGTGATTGGTTTTCATTAGGGGCTGCAGCTAGTAGGCGTTATGCATGCCTTAAAATGCTTCCTATAATTCCATTTGAGGAACTTCTTTGTAAAGAGGCAATGCAGATTTACGAGTCCTCAAAAGTCAGAGGTTCAAAGAACAAACCTAGGGACTTGGCATCTTATCATGCTACCGTCCAGCTTTTCGTGCATCTTATGCAATTTTATAAGAAGACCCTTATGCAACTTAAGGGTTCAAGATGTTCACTTTCCTCAAATACAATAGACATTGCGTTACAAAGCTGCTCATGTGGGAAAAAATATACTATCCATAAGAGGGATGATATTCTAGAACTGGAAGATGCTGCCAAAAGTTTTGAACAGGAAAAAGTTATTCAATCAAAACTTCAAGGGAAAATGAATTGTGAAGTAGATACCTTATCTTTACCAAGCGTGTTCCTCAATGCCAGAAATGAGTGCATCCAAGATCTCCAGTGTCGTACCTGTAGCGGAATTCCGATGAAGCTTCACATCACACTTGAGACGAGGCTCGCGCTTCCTCTCAGGCCCCTCTTCCTCAACACCAACCACCGAACTCTCTCCTCATCCTCATCCTCATCCTCATCCAAGCAACTCCAAGACCAAAACGAAAACGACACGCGTTTCGTGGCACTCCTTTCCGACATCGTCCGAGGTAACCAGAGCTGGAAGCTCGCCTTCAACGACCCTTCCATTTCCTCCACATTGAGACCCCACCACGTTGAACAGCTCTTGATCCAGACACTGCACAATCCTAAGTTAGCTTTGAGGTTCTTCAACTTTCTGGGTCTCCACAAAAGCTTCGACCACTCAACAACCTCGTTTGCAATATTGGTTCATGCCCTTGTTCAAGAGAGGCTCTTCTGGCCCGCAAACTCGCTCTTGCAGACCCTTTTCTTACGTGGGTCAGACCCAAAATCCGTTTTTTCCAAGTTCTTGGATTCTCATGGGCAATGTAAGTTCGTGTCCACTCTGGGTTTTGATTTGTTGGTTCAGAATTACCTGCAAAATAAAAGGGTCTTAGATGCTGTGGTGGTTTTAAAGCTCATGCTAGTTAACAAGTTATTGCCTGAAGTTAGAACATTAAGTGCCCTTTTGAATGGTCTATTGAGGATTAGAAGGTTTATAATGGTTTGGGAATTGTTTGATGAGTCCGTGAATGCCGGTGTTCGCCCTGATCCTTATACTTGTTCAGCAGTGGTAAGGAGCCTGTGTGAATTGAAGGATTTTTATAGAGCTAAGGAGAAGGTTCGGTGGATGGAATTGAATAGGTTTGATTTGAGTATTGTAACTTACAATGTCTTGATTCATGGGCTATGCAAGGGTGATCGAGTTTCGGAAGCTGTTGATGTTAAAAGCTCATTGAGGGAAAAGGCTCTGAAAGCGGATGTGGTTACGTATTGTACACTAGTACTTGGTTTTTGTAGGGTGCAACAATTTGGGGCTGGAATGCAGCTTTTGAGTGAAATGGTTGAATTGGGGTTTGCTCCGACCGAGGCTGTTATATCAGGGTTAGTGGAAGGGTTAAGAAAGCAGGGAAAGATTGATGATGCTTATGATTTGGTAGTTAAGGTAAGCAGATTTGGTTTTCTGCTGAATTTGTTTGTTTATAATGCATTAATCAACTCTTTGTGCAAAGGTGGAGATTTGGATAAGGCAGTGTCACTTTATAATAATATGTGTTTGGTGAACTTGCGTCCCAATGACATTACTTATGCCATTCTGATTGATTCCTTTTGCAGAAGGGGGAGGTTGGATGTCGCAATATCGTATTTTGATAGAATGATAGAGGATGGTATAAGAGAAACTGTATATGCCTACAACTCTCTGATAAATGGACAATGCAAGTTTGGGGATTTGAGTGCTGCTGCGTCTTTGTTTACTCAGATGATCAATAAAGGTTTGGAGCCAACTGCTACAACCTTTACACCATTGATTAGTGGTTACTGCAAAGACCTACAACTACAAAAGGCATTTCAACTATATGATGTGATGATTGAAAAAGGAATTACTCCGAATGTGTATACCTTCACTGCACTTGTTTCTGGGCTTTGCAGCGCAAATAATATGGCTGAAGCATCCAAACTTTTTGTTGAAATGGTGGAAAGGAAAATCTTGCCAAATGAAGTAACATATAATGTCATGATTGAAGGGTACTGTAAGGATGGTGACATTGATAGGGCCTTTGAGTTGCTTGAAGACATGCTTCAGAAAGGCCTTGTTCCAGACACATATACCTACAGAGCTCTTATCAGTGGCCTTTGTTCTACTGGTAGGGTGTCTGAAGCTAAAGATTTTATTGATGTTCTCCACAAGCAGGACCGTACATTAAATGAGATGTGCTATAGTGCACTTCTACATGGCTATTGCCAGGAAGGAAGATTGGTGGAGGCACTGAGTGCTTCTTATGAAATGATTCAAAGAGGAGTCAACATGGATCTGGTTTGCCATGCTGTTCTTATTGATGGTGCTCTGAAGCAGCTAGACAGGAAAACGTTATTTGGTCTCCTAAAAGAGATGCAGGATCAAGGATTGAGACCTGATAATGTAATATATACAAATATGATTGATGCATTCAGCAAAGAAGGATCTTTCGAGAAGGCTTTTCAATGTTGGGATTTAATGGTCACGGAGGACTGCTTTCCTAATGTTGTGACATATACTGCTTTGATGAATGGCTTAAGCAAAGCAGGTCAAATGGACAGAGCAGGTCTTATTTTTGAAAAAATGCTGGCTGCAAATGTCCCCCCAAATTCAATCACATATGGCTGTTTTCTTGACCATCTTACCAAGCAAGGACACATGGAGGAAGCCATAGGGCTTCACCATGCAATGCTTAAAGGGCTTTTAGTAAACACTGTGACTTACAACATTCTTATCCGGGGCTTCTGCAAATTGGGAAGATTTGATGAAGCCAGCAAAGTGCTTTCCGAAATGACTGAAAATGGTATTTTCCCTGACTGTATTACTTATTCAACTTTAATGTATGAGTATTGCAGAAGTGGGAATGTAGGAGCAGCTGTTGAAGTGTGGGATACCATGCTAAACAAAGGTCTTGAGCCGGACTTGGTTGCATATAACTTGCTCATATATGGTTGTTGTGTTAATGGAGAGCAAAACAAGGCATTCGAGTTGCGTGATGATATGTTGATGAGAGGGTTGAAGCCGAGGAAAAATTTACGAGTATTGCACAAGGTGCAATATAGGAGCATCAGTTAA 4293 0.416 MGVSRCGRRRRKTRAKNSISRSPPGSHISCKEGSKFDFTDLEWTTKIPECPVFHPSEQEFQNPLLYLHKIAPEASKFGICKIVSPIIASVPADVVLTKEKKGFKFETNVQPLWLAEWNEKDIITFTMRGRKYTYHEFEALANKGFLNRFCSSEGLSSSYVEKEFWREMASGEKRTVEYGVNIEGSAFSCHPNDKLGKSKWNLKNFSRLPESTLRLVDKEIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKIWYGVPAHAASQFENVVLHHAYSNKIMSKHGEDGAFLLLAHKTTMFPPNILLEHDVAVCKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAIGDWFSLGAAASRRYACLKMLPIIPFEELLCKEAMQIYESSKVRGSKNKPRDLASYHATVQLFVHLMQFYKKTLMQLKGSRCSLSSNTIDIALQSCSCGKKYTIHKRDDILELEDAAKSFEQEKVIQSKLQGKMNCEVDTLSLPSVFLNARNECIQDLQCRTCSGIPMKLHITLETRLALPLRPLFLNTNHRTLSSSSSSSSSKQLQDQNENDTRFVALLSDIVRGNQSWKLAFNDPSISSTLRPHHVEQLLIQTLHNPKLALRFFNFLGLHKSFDHSTTSFAILVHALVQERLFWPANSLLQTLFLRGSDPKSVFSKFLDSHGQCKFVSTLGFDLLVQNYLQNKRVLDAVVVLKLMLVNKLLPEVRTLSALLNGLLRIRRFIMVWELFDESVNAGVRPDPYTCSAVVRSLCELKDFYRAKEKVRWMELNRFDLSIVTYNVLIHGLCKGDRVSEAVDVKSSLREKALKADVVTYCTLVLGFCRVQQFGAGMQLLSEMVELGFAPTEAVISGLVEGLRKQGKIDDAYDLVVKVSRFGFLLNLFVYNALINSLCKGGDLDKAVSLYNNMCLVNLRPNDITYAILIDSFCRRGRLDVAISYFDRMIEDGIRETVYAYNSLINGQCKFGDLSAAASLFTQMINKGLEPTATTFTPLISGYCKDLQLQKAFQLYDVMIEKGITPNVYTFTALVSGLCSANNMAEASKLFVEMVERKILPNEVTYNVMIEGYCKDGDIDRAFELLEDMLQKGLVPDTYTYRALISGLCSTGRVSEAKDFIDVLHKQDRTLNEMCYSALLHGYCQEGRLVEALSASYEMIQRGVNMDLVCHAVLIDGALKQLDRKTLFGLLKEMQDQGLRPDNVIYTNMIDAFSKEGSFEKAFQCWDLMVTEDCFPNVVTYTALMNGLSKAGQMDRAGLIFEKMLAANVPPNSITYGCFLDHLTKQGHMEEAIGLHHAMLKGLLVNTVTYNILIRGFCKLGRFDEASKVLSEMTENGIFPDCITYSTLMYEYCRSGNVGAAVEVWDTMLNKGLEPDLVAYNLLIYGCCVNGEQNKAFELRDDMLMRGLKPRKNLRVLHKVQYRSIS* 1431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3339 1430 ProSiteProfiles JmjN domain profile. 50 91 IPR003349 -
Dod03g3339 1430 Gene3D Tetratricopeptide repeat domain 1292 1428 IPR011990 GO:0005515
Dod03g3339 1430 Gene3D Tetratricopeptide repeat domain 1183 1291 IPR011990 GO:0005515
Dod03g3339 1430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1101 1135 IPR002885 -
Dod03g3339 1430 SUPERFAMILY Clavaminate synthase-like 191 391 - -
Dod03g3339 1430 Pfam PPR repeat family 999 1044 IPR002885 -
Dod03g3339 1430 Pfam PPR repeat family 1065 1114 IPR002885 -
Dod03g3339 1430 Pfam PPR repeat family 1205 1254 IPR002885 -
Dod03g3339 1430 Pfam PPR repeat family 891 939 IPR002885 -
Dod03g3339 1430 Pfam PPR repeat family 1310 1358 IPR002885 -
Dod03g3339 1430 Pfam PPR repeat family 786 834 IPR002885 -
Dod03g3339 1430 ProSiteProfiles JmjC domain profile. 197 367 IPR003347 -
Dod03g3339 1430 Pfam jmjN domain 51 83 IPR003349 -
Dod03g3339 1430 SMART JmjN_1 49 92 IPR003349 -
Dod03g3339 1430 Gene3D Cupin 50 413 - -
Dod03g3339 1430 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 962 1129 - -
Dod03g3339 1430 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 863 1086 - -
Dod03g3339 1430 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1232 1414 - -
Dod03g3339 1430 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 532 988 - -
Dod03g3339 1430 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1062 1296 - -
Dod03g3339 1430 SUPERFAMILY TPR-like 1082 1332 IPR011990 GO:0005515
Dod03g3339 1430 SMART cupin_9 197 367 IPR003347 -
Dod03g3339 1430 MobiDBLite consensus disorder prediction 1 28 - -
Dod03g3339 1430 Gene3D Tetratricopeptide repeat domain 601 768 IPR011990 GO:0005515
Dod03g3339 1430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1310 1344 IPR002885 -
Dod03g3339 1430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 891 925 IPR002885 -
Dod03g3339 1430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 821 855 IPR002885 -
Dod03g3339 1430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 786 820 IPR002885 -
Dod03g3339 1430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1206 1240 IPR002885 -
Dod03g3339 1430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 926 960 IPR002885 -
Dod03g3339 1430 MobiDBLite consensus disorder prediction 1 17 - -
Dod03g3339 1430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1031 1065 IPR002885 -
Dod03g3339 1430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1136 1170 IPR002885 -
Dod03g3339 1430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 716 750 IPR002885 -
Dod03g3339 1430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1345 1379 IPR002885 -
Dod03g3339 1430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1380 1414 IPR002885 -
Dod03g3339 1430 TIGRFAM PPR: pentatricopeptide repeat domain 1243 1276 IPR002885 -
Dod03g3339 1430 TIGRFAM PPR: pentatricopeptide repeat domain 1312 1346 IPR002885 -
Dod03g3339 1430 TIGRFAM PPR: pentatricopeptide repeat domain 894 926 IPR002885 -
Dod03g3339 1430 TIGRFAM PPR: pentatricopeptide repeat domain 788 817 IPR002885 -
Dod03g3339 1430 TIGRFAM PPR: pentatricopeptide repeat domain 1033 1067 IPR002885 -
Dod03g3339 1430 TIGRFAM PPR: pentatricopeptide repeat domain 999 1032 IPR002885 -
Dod03g3339 1430 TIGRFAM PPR: pentatricopeptide repeat domain 1382 1414 IPR002885 -
Dod03g3339 1430 TIGRFAM PPR: pentatricopeptide repeat domain 823 856 IPR002885 -
Dod03g3339 1430 TIGRFAM PPR: pentatricopeptide repeat domain 928 958 IPR002885 -
Dod03g3339 1430 TIGRFAM PPR: pentatricopeptide repeat domain 1347 1380 IPR002885 -
Dod03g3339 1430 TIGRFAM PPR: pentatricopeptide repeat domain 1068 1102 IPR002885 -
Dod03g3339 1430 TIGRFAM PPR: pentatricopeptide repeat domain 1208 1242 IPR002885 -
Dod03g3339 1430 TIGRFAM PPR: pentatricopeptide repeat domain 1103 1132 IPR002885 -
Dod03g3339 1430 TIGRFAM PPR: pentatricopeptide repeat domain 1139 1171 IPR002885 -
Dod03g3339 1430 TIGRFAM PPR: pentatricopeptide repeat domain 963 996 IPR002885 -
Dod03g3339 1430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1066 1100 IPR002885 -
Dod03g3339 1430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 996 1030 IPR002885 -
Dod03g3339 1430 Pfam PPR repeat 1375 1407 IPR002885 -
Dod03g3339 1430 SUPERFAMILY HCP-like 900 1128 - -
Dod03g3339 1430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1241 1275 IPR002885 -
Dod03g3339 1430 Pfam PPR repeat 964 993 IPR002885 -
Dod03g3339 1430 Pfam PPR repeat 1278 1305 IPR002885 -
Dod03g3339 1430 Pfam PPR repeat 1139 1168 IPR002885 -
Dod03g3339 1430 Pfam JmjC domain, hydroxylase 227 350 IPR003347 -
Dod03g3339 1430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 961 995 IPR002885 -
Dod03g3339 1430 Gene3D Tetratricopeptide repeat domain 973 1160 IPR011990 GO:0005515
Dod03g3339 1430 Gene3D Tetratricopeptide repeat domain 769 884 IPR011990 GO:0005515
Dod03g3339 1430 Gene3D Tetratricopeptide repeat domain 885 972 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3339 Dod-Chr3 66010328 66019028 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3339 649 956 Glycosyltransferase AT1G05670 21.037 1.23e-13 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dod03g3339 JmjC 1.8e-38 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3339 - - adu:107477233 1499.18