Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3319 ATGGATCTTTTGCACAATGATGAGATTGATGATGATGCTGCTTTGAATTCAGATCTTTCAAGAATGGAAGAGGATCACCTGGATGACTTAGTTGAGAGTCCTAAGGCCACACCACAAGGCTGCTTCACTGTTTTGACTGAGTCCAAAATCAAGCAGCTGCAAGAGGAATCGATCAATGAGGTATCATCTCTTCTTCTGATACCAGAATCCGAGGCTTGCCTTTTGCTCACCCACTATGGCTGGAGCTTGATCAAGGTGTATGATGCCTGGTTCCATGATGAAGCAAGAACTCGAGAGCTTGTCGGGTTAATGCTGAGTTCCGATCCTCGCTTCAACAACATCGAACTGAAACTCACTTGTGAGATTTGTTATTATACACTTCCATGCAACCAGATGAAAGCTGGGAGGTGTGGCCATAGATTCTGCACCAATTGTTGGAAGAAGTATGTGGACAACAAGATCTTAGAGGGTTCCAATCAGTGCTTGAAACTGAGATGCCCTGCACCCTCTTGCGGTGCAGCTGTTGATGGCGACATGATTCGCCAATTCGCCAGCGAATCGAACCGGAACAAGTACTATCGTTTCTTGTTCCGGTCCTATGTCGAAACCAACAAGAACATGAAGTGGTGTCCAAGTCCAGGTTGTGATTTTGCTATTGCTTATGAACCAGATGGTGCAGATTATAACCATCTAGAAGCTACTTGCCTTTGTAACCATAGCTTTTGTTGGAAATGTGGTGAAGATGCTCATAGACCAATGAGCTGTGAAACCGTGAGTGAGTGGATCACAATGAATCAAACCGAGTTGGAGAGCACTCTATGGGTTTTCGCTTACACAAAACCATGCCCTGGGTGCAGTAACGCCATTGAGAAAAATGAAGGGTGCATGCATATGCTATGCACCATTTGCGGCTTCGAGTTTTGCTGGCTATGTCTTCGCGGATGGGAGACGTGTTTCATCTCTGTTTGCAACCGTTTCTCGGAGAGAAGATCATCATCACTGAGTGAGAAGGAGAGCGAGTTGGAACATAGAAGGAAGAAAGCAAAGGTCTATTTGGAGAGGTACACTCACTACTATGAGCGTTGGGCAAGCAATGAGTTCTCAAGGAAGAAAGCACTAGAGGTTATGATTTCCTACATTAAGAAAGATGAGAATGTAAGGAACATGTGCAAGAGGGATGAAAGTGTTGAAGCTGATCTTGAGTTCTTGAATGTGGCTTGGGGACAGGTTATTGAGTGTAGGAGATTGCTGAAATGGACCTATGCTTATGGTTACTTTATACCTGAAGATGAAGAGGCTAAGAAGGAGTTCTTTGAGTACACACAAGGTATCGCAGAGAATGCTTTGGAAACTCTTCATCAATATGCTGAAAAGGTACTGCGGATAGTTCTAGGTGGAAGGCGAAGAAATGGGTCTGACATGTTTCGTTCTAAGCTTATGCATCTTACCAATGTGACTAGGAAATTCTTTGAGAATCTGGTGAATGCATTGGAGAATAATGGGCTAGATGATGTGTGTGTAAAGAGCTATGGTGGGGTGAAAAAGGGGTCACGTGAGAATGTTGGGGACAGCTCAAGAACTACAAAGGGTGGTGGTGGTCTGGTGGAAGAACAATTAACACAAGGGAGGGGATGA 1635 0.4446 MDLLHNDEIDDDAALNSDLSRMEEDHLDDLVESPKATPQGCFTVLTESKIKQLQEESINEVSSLLLIPESEACLLLTHYGWSLIKVYDAWFHDEARTRELVGLMLSSDPRFNNIELKLTCEICYYTLPCNQMKAGRCGHRFCTNCWKKYVDNKILEGSNQCLKLRCPAPSCGAAVDGDMIRQFASESNRNKYYRFLFRSYVETNKNMKWCPSPGCDFAIAYEPDGADYNHLEATCLCNHSFCWKCGEDAHRPMSCETVSEWITMNQTELESTLWVFAYTKPCPGCSNAIEKNEGCMHMLCTICGFEFCWLCLRGWETCFISVCNRFSERRSSSLSEKESELEHRRKKAKVYLERYTHYYERWASNEFSRKKALEVMISYIKKDENVRNMCKRDESVEADLEFLNVAWGQVIECRRLLKWTYAYGYFIPEDEEAKKEFFEYTQGIAENALETLHQYAEKVLRIVLGGRRRNGSDMFRSKLMHLTNVTRKFFENLVNALENNGLDDVCVKSYGGVKKGSRENVGDSSRTTKGGGGLVEEQLTQGRG* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3319 544 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ARI5-RELATED 21 508 - -
Dod03g3319 544 SUPERFAMILY RING/U-box 118 199 - -
Dod03g3319 544 Pfam Ariadne domain 341 457 IPR045840 -
Dod03g3319 544 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 21 508 IPR031127 GO:0004842|GO:0016567
Dod03g3319 544 ProSiteProfiles TRIAD supradomain profile. 116 327 IPR044066 -
Dod03g3319 544 ProSiteProfiles Zinc finger RING-type profile. 120 167 IPR001841 -
Dod03g3319 544 SUPERFAMILY RING/U-box 266 317 - -
Dod03g3319 544 MobiDBLite consensus disorder prediction 516 544 - -
Dod03g3319 544 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 205 IPR013083 -
Dod03g3319 544 CDD RING-HC_RBR_TRIAD1_like 120 171 - -
Dod03g3319 544 Pfam IBR domain, a half RING-finger domain 279 316 IPR002867 -
Dod03g3319 544 Pfam IBR domain, a half RING-finger domain 190 255 IPR002867 -
Dod03g3319 544 SUPERFAMILY RING/U-box 191 263 - -
Dod03g3319 544 SMART ibrneu5 190 255 IPR002867 -
Dod03g3319 544 SMART ibrneu5 262 318 IPR002867 -
Dod03g3319 544 Gene3D - 251 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3319 Dod-Chr3 65861146 65863958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3319 56 533 C3H Transcription Factor Family AT2G31510 47.433 4.41e-146 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3319 K11968 - qsu:111995178 477.633