Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3309 ATGTCTGCTGCAGTTCCCTTTCCCTCAAACCTTTTGCCAGGTCCTGGAAATCCTGAATGGATGAGCAAAGCTGATAATGCATGGCAACTAGTTGCTGCCACACTAGTTGGCCTTCAAAGTGTTCCTGGGCTCATAATCTTGTATGGAGGAGCAGTTAAGAAGAAATGGGCTGTGAACTCAGCATTCATGTCCCTCTATGCTTTTGCATGTGTTTTTTTCTGTTGGGTTGTGTGGGGTTATAGGATGTCCTTTGGTGATACGCTTTTCCCATTTTTGGGCAAGCCTGCTGTTGCATTGGATGAGAAATATCTGTTCACTAAGGCCTTTTCTGGGGCATTCCCAAATGCCACTATGGTCTATTTTCAGTGTGTCTTTGCAGCCATTACTTTGATTTTGATAGCTGGGGCTTTGTTGGGCCGCATGAACTTTTATGCATGGATGATTTTTGTGCCCTTGTGGCTCACTTTCTCCTACACTTTCACAGCATTTAGCATATGGAGTCCAAACGGTTTTCTCTTCAAACTAGGCATAATAGATTACTCAGGTGGATATGTGATCCATTTGTCTTCTGGAGTAGCTGGTTTCACTGCAGCTTATTGGGTTGGACCACGGCTTAACAAGGACAGGGAAAGGTTCCCTCCAAACAACATCCTCCTTATGCTAGCAGGGGCAGGTTTACTGTGGATGGGTTGGACCGGCTTCAACGGTGGAGACCCATACGCAGTAAACATGGATGCTTCGTTGGCTGTCCTCAACACACATGCTTGCACCGCCACCAGCTTGCTCACATGGGTCATCCTTGATGTCATCCTTTTCAGGAAACCTTCCGTCATTGGAGCTGTTCAAGGCATGATCACTGGCTTGGTCTGCATAACACCCGCTGCAGGTGTTGTGCAAGGATGGGCAGCACTTCTAATGGGGGTCTTGTCTGGCTCAATTCCTTGGTTCACCATGATGGTGGTCCACAAGAGATCAAAGCTGCTCCAGAAGGTGGATGATACAATGGCAGTGTTGCACACTCATGCCATTGCAGGAAGCCTTGGAGGAATCCTCACAGGGCTGTTTGCTGAGCCAAAGCTGAACAACTTGTTCTATGGTGCATATGCTAAATATGTTGGCCTCTTTTATGGCTTCCAAATGAAGATGGTTAAAACCGGGTTCAGGCAAATACTAATCCAGTTACTTGGGATCTTGTTTGTAGTCTCACTCAATGTGATAACCACAAGTTTGATATGCCTCTTAATTAGGATTGTAGTTCCACTAAAGATGTCTGAAGAGGACATGGAGATAGGTGATGAGGCTGCTCATGGTGAAGAAGCGTATGCAATATGGGGTCAAGGTGATAAGCTTGAGAATGCAAGTTCAAAGTATGGAAGTTCATTATATGATGATGTCGAAGCTGCAGCCACCAAGAAAAAGCGTGCTGGCCAGATTGAGTTGATGTAG 1446 0.4592 MSAAVPFPSNLLPGPGNPEWMSKADNAWQLVAATLVGLQSVPGLIILYGGAVKKKWAVNSAFMSLYAFACVFFCWVVWGYRMSFGDTLFPFLGKPAVALDEKYLFTKAFSGAFPNATMVYFQCVFAAITLILIAGALLGRMNFYAWMIFVPLWLTFSYTFTAFSIWSPNGFLFKLGIIDYSGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYAVNMDASLAVLNTHACTATSLLTWVILDVILFRKPSVIGAVQGMITGLVCITPAAGVVQGWAALLMGVLSGSIPWFTMMVVHKRSKLLQKVDDTMAVLHTHAIAGSLGGILTGLFAEPKLNNLFYGAYAKYVGLFYGFQMKMVKTGFRQILIQLLGILFVVSLNVITTSLICLLIRIVVPLKMSEEDMEIGDEAAHGEEAYAIWGQGDKLENASSKYGSSLYDDVEAAATKKKRAGQIELM* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3309 481 ProSitePatterns Ammonium transporters signature. 179 204 IPR018047 GO:0008519|GO:0016020|GO:0072488
Dod03g3309 481 Pfam Ammonium Transporter Family 27 441 IPR024041 GO:0008519|GO:0016020|GO:0072488
Dod03g3309 481 TIGRFAM amt: ammonium transporter 25 441 IPR001905 GO:0008519|GO:0016020|GO:0072488
Dod03g3309 481 SUPERFAMILY Ammonium transporter 20 422 - -
Dod03g3309 481 Gene3D Ammonium transporter AmtB like domains 16 445 IPR029020 -
Dod03g3309 481 PANTHER AMMONIUM TRANSPORTER MEP2 2 480 IPR001905 GO:0008519|GO:0016020|GO:0072488
Dod03g3309 481 PRINTS Rhesus blood group protein signature 249 271 IPR002229 GO:0005887
Dod03g3309 481 PRINTS Rhesus blood group protein signature 218 236 IPR002229 GO:0005887
Dod03g3309 481 PRINTS Rhesus blood group protein signature 122 138 IPR002229 GO:0005887
Dod03g3309 481 PANTHER AMMONIUM TRANSPORTER 2 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3309 Dod-Chr3 65759898 65762609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3309 116 468 Inorganic Solute Cotransporters AT2G38290 62.040 5.15e-146 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3309 K03320 - gmx:100787856 843.573