Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dod03g3279 | ATGGCATCGGCGTTCGTCAAGCTCGACGATTCCCCAATGTTCCAGAAGCAGTTATTTTCTCTTGAAGAAACAGCTGATGAGTTAAAGGATCGGTGCCAGACACTATTCAAAGGGTGTAAGAAGTTCATGACAGCTTTGGGGGAAGCATATAATGGAGAAATTGCATTTGCTGATTCATTAGAAATCTTCGGTGGTGGCCAGGATGACCCTGTCAGTGTATCAATTGGAGGACCGGTCATATCTAAGTTTATCACCGCATTGCGTGAGCTGGCTACTTTTAAAGAGCTTCTTCGTTCACAGGTAGAGCATGTGTTGATTGACCGGCTGATGGAGTTTATGACTGTTGATTTGCAGGAGGCAAAGGATTCTCGCAAGCGTTTTGACAAAGCTGTGCATTCTTATGATCAGTCAAGAGAAAAGTTTGTGTCTTTGAAGAAGAATACGCCAGGAGACATTGTTGCTGAATTAGAAGAGGATCTACAGAATTCAAAGTCAGCATTTGAAAAGAGTCGCTTCAATCTAGTAAACTCTCTCATGAATATTGAAGTGAAAAAGAAGTATGAGTTCTTGGAGTCCATTAGTGCAATAATGGATGCTCATCTGAGATACTTTAAGCTGGGCTATGACTTACTAAGCCAAATGGAGCCCTATATTCACCAGGTGCTAACATATGCGCAACAATCTAAGGAACTGGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATCCAGGAATATCGAACACAGTCTGAGATGGAAAATATTCGAGCTTCTAGCAATACAGAACCCTTGCTAAGTGCTGATGGCACACATATTGTTGGTTTGAACTCTTACAAAAACTTTGAAGGAGGGATGCAGTCTGCAGCCAAAGGGGAGGTTCAAACAGTTAAACAGGGCTATCTGTTAAAACGCTCATCACACTTGCGAGGAGATTGGAAACGGAGGTTCTTTGTACTTGACAACCAAGGGAATTTATTTTATTACAGAGCGAAGGGAGCCAAACCCACGGGCTCTCAGTCATATAATTATTCTCGTCCTTCTGAACAAAATAGTGGCATGTTTGGTAGATTTCGCTCAAGGCACAACAGGGCATCATCGCTAAATGAGGATGTTTTGGGTTGTTATACAATTGATCTGTGCACATCTACTATAAAGATGGATGCAGAGGACACAGATCTACGTCTTTGCTTCCGGATAATTTCCCCCTCAAAAACATATACACTGCAGGCAGAAAATGAAGCTGATAGGATGGACTGGGTAAACAAAATTACTGGGGCTATTACATCACGTTTTAATTCCCAGTTTCTTCAAGAGCCTCATCATGATAGATTGCATTTGGAAAATAAAAACTCAGCCATTGGTTCTTCTTTGACTAGTCAATCAGAGGATGGTCACAAATCTTTGATGGATGACGTATATTCGAAGGAAGTCCTTAGTGTCTCCAAGATTTTAAGGGGCATTCCTGGGAATGATAAATGTGCTGAGTGCAGTGCTTCTGATCCAGACTGGGCATCTCTAAACCTTGGCATATTATTATGTATAGAATGCTCTGGCGTCCATCGAAATCTTGGAGTTCATATCTCAAAGGTGAGATCTATAACCTTAGACGTTAAGGTTTGGGAACCTACTGTTTTGGAGTTATTTGATAAGTTGGGTAATGCTTATTGTAATTCTATATGGGAAGGCATGCTTCGACTTGATGATGAAAGGGTAGGTGAATCAAATGGCCCGACAAAACCATGCTTCATGGATGCCTTCCAAGACAAGGAAAAGTATATTCAAGCGAAGTATGTGGAGAAATCACTGATCATCCGAGAAGAGGATACACCAGGGAATCCTTCAGTTTCCATAAGAATCTGGCAAGCAGTTCAGGCTATAAATGTACGAGAAGTGTATCGCCTTATTGTCACATCAAATTCAAATGTTATTAACACAAAATATGATGATGTGGTTCACCATGCTGATGCTAAAACCTTAGGCCTAGAAGGTATTACAATGGAAGGACATGAGCATGATCCTGAGGCCTGTCTGGGAATTAAACAGATTAATGAGACAGAGAAGTGTTTCTATGGTTGGTCATTATTACATCTGGCATGTCATTCTGACAATGCACTAATGGTTGAGTTGTTGCTGCAATTTGGTGCTGATGTAAACATGCATGACTATCATGGGAGGACTCCCTTGCACCATTGCATTTCTAGTGGGAAAAATTCATTGGCAAAGTTTCTATTGAGAAGGGGTGCAAGACCATCAGTTAAAGATGCTGGTGGACTCACTGTACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGACGAACAGCTATTTATCATGCTTGCTGAGTGCCAGTAA | 2352 | 0.4128 | MASAFVKLDDSPMFQKQLFSLEETADELKDRCQTLFKGCKKFMTALGEAYNGEIAFADSLEIFGGGQDDPVSVSIGGPVISKFITALRELATFKELLRSQVEHVLIDRLMEFMTVDLQEAKDSRKRFDKAVHSYDQSREKFVSLKKNTPGDIVAELEEDLQNSKSAFEKSRFNLVNSLMNIEVKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANIEQDKLAKRIQEYRTQSEMENIRASSNTEPLLSADGTHIVGLNSYKNFEGGMQSAAKGEVQTVKQGYLLKRSSHLRGDWKRRFFVLDNQGNLFYYRAKGAKPTGSQSYNYSRPSEQNSGMFGRFRSRHNRASSLNEDVLGCYTIDLCTSTIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAITSRFNSQFLQEPHHDRLHLENKNSAIGSSLTSQSEDGHKSLMDDVYSKEVLSVSKILRGIPGNDKCAECSASDPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTVLELFDKLGNAYCNSIWEGMLRLDDERVGESNGPTKPCFMDAFQDKEKYIQAKYVEKSLIIREEDTPGNPSVSIRIWQAVQAINVREVYRLIVTSNSNVINTKYDDVVHHADAKTLGLEGITMEGHEHDPEACLGIKQINETEKCFYGWSLLHLACHSDNALMVELLLQFGADVNMHDYHGRTPLHHCISSGKNSLAKFLLRRGARPSVKDAGGLTVLERAMEMGAITDEQLFIMLAECQ* | 784 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dod03g3279 | 783 | Gene3D | - | 290 | 448 | IPR011993 | - | |
Dod03g3279 | 783 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 481 | 603 | IPR037278 | - | |
Dod03g3279 | 783 | ProSiteProfiles | Ankyrin repeat profile. | 690 | 722 | IPR002110 | GO:0005515 | |
Dod03g3279 | 783 | SUPERFAMILY | PH domain-like | 295 | 442 | - | - | |
Dod03g3279 | 783 | Pfam | PH domain | 296 | 427 | IPR001849 | - | |
Dod03g3279 | 783 | ProSiteProfiles | Ankyrin repeat profile. | 723 | 755 | IPR002110 | GO:0005515 | |
Dod03g3279 | 783 | SMART | 5bar | 13 | 220 | IPR004148 | GO:0005515|GO:0005737 | |
Dod03g3279 | 783 | ProSiteProfiles | Ankyrin repeat region circular profile. | 723 | 754 | - | - | |
Dod03g3279 | 783 | CDD | ArfGap | 482 | 597 | - | - | |
Dod03g3279 | 783 | Pfam | BAR domain of APPL family | 8 | 230 | - | - | |
Dod03g3279 | 783 | Gene3D | Arf GTPase activating protein | 461 | 610 | IPR038508 | - | |
Dod03g3279 | 783 | Gene3D | Arfaptin homology (AH) domain/BAR domain | 7 | 254 | IPR027267 | - | |
Dod03g3279 | 783 | ProSiteProfiles | Ankyrin repeat region circular profile. | 690 | 721 | - | - | |
Dod03g3279 | 783 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 478 | 610 | IPR001164 | GO:0005096 | |
Dod03g3279 | 783 | PANTHER | CENTAURIN/ARF | 3 | 779 | IPR045258 | GO:0005096 | |
Dod03g3279 | 783 | PRINTS | HIV Rev interacting protein signature | 509 | 526 | IPR001164 | GO:0005096 | |
Dod03g3279 | 783 | PRINTS | HIV Rev interacting protein signature | 532 | 553 | IPR001164 | GO:0005096 | |
Dod03g3279 | 783 | PRINTS | HIV Rev interacting protein signature | 490 | 509 | IPR001164 | GO:0005096 | |
Dod03g3279 | 783 | Gene3D | - | 678 | 779 | IPR036770 | - | |
Dod03g3279 | 783 | SMART | arf_gap_3 | 478 | 610 | IPR001164 | GO:0005096 | |
Dod03g3279 | 783 | CDD | BAR_SFC_plant | 16 | 217 | IPR035670 | - | |
Dod03g3279 | 783 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 | 3 | 779 | - | - | |
Dod03g3279 | 783 | SMART | ANK_2a | 690 | 719 | IPR002110 | GO:0005515 | |
Dod03g3279 | 783 | SMART | ANK_2a | 723 | 752 | IPR002110 | GO:0005515 | |
Dod03g3279 | 783 | Pfam | Putative GTPase activating protein for Arf | 482 | 602 | IPR001164 | GO:0005096 | |
Dod03g3279 | 783 | ProSiteProfiles | PH domain profile. | 294 | 428 | IPR001849 | - | |
Dod03g3279 | 783 | SMART | PH_update | 295 | 430 | IPR001849 | - | |
Dod03g3279 | 783 | SUPERFAMILY | BAR/IMD domain-like | 8 | 317 | IPR027267 | - | |
Dod03g3279 | 783 | Coils | Coil | 229 | 249 | - | - | |
Dod03g3279 | 783 | SUPERFAMILY | Ankyrin repeat | 681 | 769 | IPR036770 | - | |
Dod03g3279 | 783 | CDD | PH_ACAP | 297 | 432 | - | - | |
Dod03g3279 | 783 | Pfam | Ankyrin repeats (3 copies) | 683 | 754 | IPR002110 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dod03g3279 | Dod-Chr3 | 65496042 | 65506722 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dod03g3279 | 488 | 597 | C2H2 Transcription Factor Family | AT4G05330 | 42.342 | 1.25e-18 | 86.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Dod03g3279 | K12489 | - | gmx:100796006 | 1332.01 |