Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3279 ATGGCATCGGCGTTCGTCAAGCTCGACGATTCCCCAATGTTCCAGAAGCAGTTATTTTCTCTTGAAGAAACAGCTGATGAGTTAAAGGATCGGTGCCAGACACTATTCAAAGGGTGTAAGAAGTTCATGACAGCTTTGGGGGAAGCATATAATGGAGAAATTGCATTTGCTGATTCATTAGAAATCTTCGGTGGTGGCCAGGATGACCCTGTCAGTGTATCAATTGGAGGACCGGTCATATCTAAGTTTATCACCGCATTGCGTGAGCTGGCTACTTTTAAAGAGCTTCTTCGTTCACAGGTAGAGCATGTGTTGATTGACCGGCTGATGGAGTTTATGACTGTTGATTTGCAGGAGGCAAAGGATTCTCGCAAGCGTTTTGACAAAGCTGTGCATTCTTATGATCAGTCAAGAGAAAAGTTTGTGTCTTTGAAGAAGAATACGCCAGGAGACATTGTTGCTGAATTAGAAGAGGATCTACAGAATTCAAAGTCAGCATTTGAAAAGAGTCGCTTCAATCTAGTAAACTCTCTCATGAATATTGAAGTGAAAAAGAAGTATGAGTTCTTGGAGTCCATTAGTGCAATAATGGATGCTCATCTGAGATACTTTAAGCTGGGCTATGACTTACTAAGCCAAATGGAGCCCTATATTCACCAGGTGCTAACATATGCGCAACAATCTAAGGAACTGGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATCCAGGAATATCGAACACAGTCTGAGATGGAAAATATTCGAGCTTCTAGCAATACAGAACCCTTGCTAAGTGCTGATGGCACACATATTGTTGGTTTGAACTCTTACAAAAACTTTGAAGGAGGGATGCAGTCTGCAGCCAAAGGGGAGGTTCAAACAGTTAAACAGGGCTATCTGTTAAAACGCTCATCACACTTGCGAGGAGATTGGAAACGGAGGTTCTTTGTACTTGACAACCAAGGGAATTTATTTTATTACAGAGCGAAGGGAGCCAAACCCACGGGCTCTCAGTCATATAATTATTCTCGTCCTTCTGAACAAAATAGTGGCATGTTTGGTAGATTTCGCTCAAGGCACAACAGGGCATCATCGCTAAATGAGGATGTTTTGGGTTGTTATACAATTGATCTGTGCACATCTACTATAAAGATGGATGCAGAGGACACAGATCTACGTCTTTGCTTCCGGATAATTTCCCCCTCAAAAACATATACACTGCAGGCAGAAAATGAAGCTGATAGGATGGACTGGGTAAACAAAATTACTGGGGCTATTACATCACGTTTTAATTCCCAGTTTCTTCAAGAGCCTCATCATGATAGATTGCATTTGGAAAATAAAAACTCAGCCATTGGTTCTTCTTTGACTAGTCAATCAGAGGATGGTCACAAATCTTTGATGGATGACGTATATTCGAAGGAAGTCCTTAGTGTCTCCAAGATTTTAAGGGGCATTCCTGGGAATGATAAATGTGCTGAGTGCAGTGCTTCTGATCCAGACTGGGCATCTCTAAACCTTGGCATATTATTATGTATAGAATGCTCTGGCGTCCATCGAAATCTTGGAGTTCATATCTCAAAGGTGAGATCTATAACCTTAGACGTTAAGGTTTGGGAACCTACTGTTTTGGAGTTATTTGATAAGTTGGGTAATGCTTATTGTAATTCTATATGGGAAGGCATGCTTCGACTTGATGATGAAAGGGTAGGTGAATCAAATGGCCCGACAAAACCATGCTTCATGGATGCCTTCCAAGACAAGGAAAAGTATATTCAAGCGAAGTATGTGGAGAAATCACTGATCATCCGAGAAGAGGATACACCAGGGAATCCTTCAGTTTCCATAAGAATCTGGCAAGCAGTTCAGGCTATAAATGTACGAGAAGTGTATCGCCTTATTGTCACATCAAATTCAAATGTTATTAACACAAAATATGATGATGTGGTTCACCATGCTGATGCTAAAACCTTAGGCCTAGAAGGTATTACAATGGAAGGACATGAGCATGATCCTGAGGCCTGTCTGGGAATTAAACAGATTAATGAGACAGAGAAGTGTTTCTATGGTTGGTCATTATTACATCTGGCATGTCATTCTGACAATGCACTAATGGTTGAGTTGTTGCTGCAATTTGGTGCTGATGTAAACATGCATGACTATCATGGGAGGACTCCCTTGCACCATTGCATTTCTAGTGGGAAAAATTCATTGGCAAAGTTTCTATTGAGAAGGGGTGCAAGACCATCAGTTAAAGATGCTGGTGGACTCACTGTACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGACGAACAGCTATTTATCATGCTTGCTGAGTGCCAGTAA 2352 0.4128 MASAFVKLDDSPMFQKQLFSLEETADELKDRCQTLFKGCKKFMTALGEAYNGEIAFADSLEIFGGGQDDPVSVSIGGPVISKFITALRELATFKELLRSQVEHVLIDRLMEFMTVDLQEAKDSRKRFDKAVHSYDQSREKFVSLKKNTPGDIVAELEEDLQNSKSAFEKSRFNLVNSLMNIEVKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANIEQDKLAKRIQEYRTQSEMENIRASSNTEPLLSADGTHIVGLNSYKNFEGGMQSAAKGEVQTVKQGYLLKRSSHLRGDWKRRFFVLDNQGNLFYYRAKGAKPTGSQSYNYSRPSEQNSGMFGRFRSRHNRASSLNEDVLGCYTIDLCTSTIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAITSRFNSQFLQEPHHDRLHLENKNSAIGSSLTSQSEDGHKSLMDDVYSKEVLSVSKILRGIPGNDKCAECSASDPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTVLELFDKLGNAYCNSIWEGMLRLDDERVGESNGPTKPCFMDAFQDKEKYIQAKYVEKSLIIREEDTPGNPSVSIRIWQAVQAINVREVYRLIVTSNSNVINTKYDDVVHHADAKTLGLEGITMEGHEHDPEACLGIKQINETEKCFYGWSLLHLACHSDNALMVELLLQFGADVNMHDYHGRTPLHHCISSGKNSLAKFLLRRGARPSVKDAGGLTVLERAMEMGAITDEQLFIMLAECQ* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3279 783 Gene3D - 290 448 IPR011993 -
Dod03g3279 783 SUPERFAMILY ArfGap/RecO-like zinc finger 481 603 IPR037278 -
Dod03g3279 783 ProSiteProfiles Ankyrin repeat profile. 690 722 IPR002110 GO:0005515
Dod03g3279 783 SUPERFAMILY PH domain-like 295 442 - -
Dod03g3279 783 Pfam PH domain 296 427 IPR001849 -
Dod03g3279 783 ProSiteProfiles Ankyrin repeat profile. 723 755 IPR002110 GO:0005515
Dod03g3279 783 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Dod03g3279 783 ProSiteProfiles Ankyrin repeat region circular profile. 723 754 - -
Dod03g3279 783 CDD ArfGap 482 597 - -
Dod03g3279 783 Pfam BAR domain of APPL family 8 230 - -
Dod03g3279 783 Gene3D Arf GTPase activating protein 461 610 IPR038508 -
Dod03g3279 783 Gene3D Arfaptin homology (AH) domain/BAR domain 7 254 IPR027267 -
Dod03g3279 783 ProSiteProfiles Ankyrin repeat region circular profile. 690 721 - -
Dod03g3279 783 ProSiteProfiles ARF GTPase-activating proteins domain profile. 478 610 IPR001164 GO:0005096
Dod03g3279 783 PANTHER CENTAURIN/ARF 3 779 IPR045258 GO:0005096
Dod03g3279 783 PRINTS HIV Rev interacting protein signature 509 526 IPR001164 GO:0005096
Dod03g3279 783 PRINTS HIV Rev interacting protein signature 532 553 IPR001164 GO:0005096
Dod03g3279 783 PRINTS HIV Rev interacting protein signature 490 509 IPR001164 GO:0005096
Dod03g3279 783 Gene3D - 678 779 IPR036770 -
Dod03g3279 783 SMART arf_gap_3 478 610 IPR001164 GO:0005096
Dod03g3279 783 CDD BAR_SFC_plant 16 217 IPR035670 -
Dod03g3279 783 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 3 779 - -
Dod03g3279 783 SMART ANK_2a 690 719 IPR002110 GO:0005515
Dod03g3279 783 SMART ANK_2a 723 752 IPR002110 GO:0005515
Dod03g3279 783 Pfam Putative GTPase activating protein for Arf 482 602 IPR001164 GO:0005096
Dod03g3279 783 ProSiteProfiles PH domain profile. 294 428 IPR001849 -
Dod03g3279 783 SMART PH_update 295 430 IPR001849 -
Dod03g3279 783 SUPERFAMILY BAR/IMD domain-like 8 317 IPR027267 -
Dod03g3279 783 Coils Coil 229 249 - -
Dod03g3279 783 SUPERFAMILY Ankyrin repeat 681 769 IPR036770 -
Dod03g3279 783 CDD PH_ACAP 297 432 - -
Dod03g3279 783 Pfam Ankyrin repeats (3 copies) 683 754 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3279 Dod-Chr3 65496042 65506722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3279 488 597 C2H2 Transcription Factor Family AT4G05330 42.342 1.25e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3279 K12489 - gmx:100796006 1332.01