Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3264 ATGGGAACTAGGGTTAGTGGGAAGGTCAAGTGGTTCAATGACCAGAAGGGTTTCGGGTTCATAACCCCCGACGATGGCGGCGAAGAACTCTTCGTTCACCAATCCTCGATTCGATCCGAAGGGTTTCGCAGCCTCGCCGAGGGAGAGTCCGTTGAGTTCCTCATCGATTCCGATTCCGACGGACGCACCAAGGCTGTTGATGTCACTGGCCCCGACGGTTGCAACGTCCAAGGCAGTCGCCGCGGAGGCGGAGGCGGAGGCGGAGGAGGAGGAGGCAGAGGTTACGGAGGTGGAGGACGAGGTGGTAGTGGTGGTGGTGGCTACGGAGGCGGATACGGTGGTGGAGGTGGTTACGGTGGTGGACGCGGTGGAGGACGTGGTGGTGGTGGCTACGGCGGAGGCGGCGGTGGCGCTGGGGCTTGTTACAGCTGCGGTGAGATGGGACACATGGCTAGGGACTGCAACCAGGGAGGAGGCGGCGGAGGTGGTGGAAGGTACGGCGGCGGTGGTGGTGGAGGCGGCGGTGGGAGCTGCTACAACTGCGGGGAGTCTGGGCATTTCGCAAGGGATTGCCCAACCGGTGCTCGTTGA 591 0.6311 MGTRVSGKVKWFNDQKGFGFITPDDGGEELFVHQSSIRSEGFRSLAEGESVEFLIDSDSDGRTKAVDVTGPDGCNVQGSRRGGGGGGGGGGGRGYGGGGRGGSGGGGYGGGYGGGGGYGGGRGGGRGGGGYGGGGGGAGACYSCGEMGHMARDCNQGGGGGGGGRYGGGGGGGGGGSCYNCGESGHFARDCPTGAR* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3264 196 MobiDBLite consensus disorder prediction 61 90 - -
Dod03g3264 196 Gene3D - 2 82 IPR012340 -
Dod03g3264 196 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Dod03g3264 196 ProSiteProfiles Zinc finger CCHC-type profile. 141 156 IPR001878 GO:0003676|GO:0008270
Dod03g3264 196 Pfam Zinc knuckle 140 155 IPR001878 GO:0003676|GO:0008270
Dod03g3264 196 Pfam Zinc knuckle 177 192 IPR001878 GO:0003676|GO:0008270
Dod03g3264 196 PANTHER COLD SHOCK DOMAIN PROTEIN 2 3 193 - -
Dod03g3264 196 SMART csp_8 6 71 IPR011129 GO:0003676
Dod03g3264 196 SUPERFAMILY Retrovirus zinc finger-like domains 133 193 IPR036875 GO:0003676|GO:0008270
Dod03g3264 196 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Dod03g3264 196 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Dod03g3264 196 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Dod03g3264 196 SUPERFAMILY Nucleic acid-binding proteins 3 70 IPR012340 -
Dod03g3264 196 CDD CSP_CDS 5 70 IPR002059 GO:0003676
Dod03g3264 196 ProSiteProfiles Zinc finger CCHC-type profile. 178 192 IPR001878 GO:0003676|GO:0008270
Dod03g3264 196 Gene3D - 173 196 - -
Dod03g3264 196 Gene3D - 136 163 - -
Dod03g3264 196 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Dod03g3264 196 PANTHER COLD SHOCK PROTEIN 1 3 193 - -
Dod03g3264 196 SMART c2hcfinal6 140 156 IPR001878 GO:0003676|GO:0008270
Dod03g3264 196 SMART c2hcfinal6 177 193 IPR001878 GO:0003676|GO:0008270
Dod03g3264 196 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3264 Dod-Chr3 65332458 65334338 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Dod03g3264 CSD 1.5e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3264 - - cam:101490833 186.422