Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3250 ATGGGAAGATCTCCTTGCTGTGAGAAAGCACACACAAACAAAGGTGCATGGACCAAAGAAGAAGATGACAGGCTCATATCTTACATTAGAGCTCATGGTGAGGGCTGCTGGCGTTCCCTCCCCAAAGCCGCAGGCCTTCTCCGGTGCGGCAAGAGCTGCCGCCTCCGGTGGATCAACTACCTCCGCCCTGACCTCAAGAGGGGCAACTTCACTGAAGAAGAAGATGAACTCATCATCAAACTCCATAGCCTCCTTGGTAACAAGTGGTCTCTTATAGCTGGAAGATTGCCAGGGAGGACAGACAATGAGATAAAGAACTATTGGAACACACACATAAGAAGGAAGCTTCTGAACAGAGGAATTGACCCCGCAACTCATAGGCCTCTCAACGAGGCTGCAGCACATGCTCAGAACCAAGAACCATCATCTATTGTCGCACCAACAGCAACAACAACTACTATATCTTTTGCTTCATCAGCGCCTACTTCTAATGTTCCAGTTAAACAAGAACAAGAGACTACAACTACAACTACAAGTACTAGTAACGGAACCATGTTTGGGATTGTGGAGAATAAGAAAGATGTTATTAAAGGATCATCATCAGTGTTGGAAAAGTGCCCTGACTTGAACCTTGAGTTAACTATTAGTCCTCCACGTTATGTTGAGCCTGAACAGCAATTGGAGAGAAGCCTTTGCTTTGTTTGCAGTTTGGGTTTGCAGAACAGCAAGGATTGCAGATGTGGGATTGGTAACAACATGGGAAGCAACACTAGTGGTACTAATGGTGGCAACAACAATGGTGCTGGCTATGATTTCTTGGGATTGAAAGCCGGTGTTTGGGATTATCGAAGCTTGGAAATGAAGTGA 867 0.4579 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEAAAHAQNQEPSSIVAPTATTTTISFASSAPTSNVPVKQEQETTTTTTSTSNGTMFGIVENKKDVIKGSSSVLEKCPDLNLELTISPPRYVEPEQQLERSLCFVCSLGLQNSKDCRCGIGNNMGSNTSGTNGGNNNGAGYDFLGLKAGVWDYRSLEMK* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3250 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod03g3250 288 CDD SANT 69 112 IPR001005 -
Dod03g3250 288 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 252 - -
Dod03g3250 288 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Dod03g3250 288 CDD SANT 16 61 IPR001005 -
Dod03g3250 288 SMART sant 66 114 IPR001005 -
Dod03g3250 288 SMART sant 13 63 IPR001005 -
Dod03g3250 288 Gene3D - 14 66 - -
Dod03g3250 288 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod03g3250 288 MobiDBLite consensus disorder prediction 157 182 - -
Dod03g3250 288 Gene3D - 68 142 - -
Dod03g3250 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod03g3250 288 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod03g3250 288 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Dod03g3250 288 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 252 - -
Dod03g3250 288 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3250 Dod-Chr3 65194891 65196766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3250 1 288 MYB Transcription Factor Family AT4G38620 60.678 6.47e-118 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod03g3250 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3250 K09422 - zju:107404478 371.703