Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3199 ATGAAGATCCAGTGTGATGTGTGTCACAAAGTTGAGGCCTCAGTGTTCTGTCCTGCTGATGAAGCTGCTCTATGCCATGCCTGTGATGGTACAATACACCGTGCCAGCAAGCTTGCAGGCAAACACACACGCTTCTGTCTGCATCAACCCAACTCCAAAGACTCCCCTCTTTGTGATATCTGCCAAAAGAGGCGTGCATACATATTTTGCCGAGAAGACAGGGCAATACTATGCAGAGAATGTGACCTTCCTATCCATGGAGTCAATGAACATACCCAGAAGCATGACAGGTTTCTTCTCACAGGTTCAAAGCTCGGTTCTTCTTCAGAGTCAACATCATTGTCCTCGGAAGATAGAGCCGCTAGCTCTGAAGTAAGAACCTCTCGTTCTAATGCAAACAATAATTATATGGCTAGTGACACGGGTTCAGTTTCAACAAGCAGCATTTCTGAGTACTTGATTGGGACCATACCCGGTTACTGCATGGAAGACCTTCTTGATGCTTCATTTGCACCAAATGGTTTCTGTAAGGATTATGAGCACCAGTCAGTGTTTCAGGATAGAAATATTCAAGTCGGCATGTGTTCATTTCCATGGGAAGCGTGGTCACCACAATCTCAAGTAGTTAGATCCCCTGAGCTTAGCACTTCTAATAATCTTCCTCAGCTTGATGATTCTTCTTCTATTGGAGTCAAGGAAATGCCAAGAACGAGCACTGCCGAAGGATACTCTAATTGGGGATACAATGGCTACCCAGTTCCTTCAGTTAGTCCTCCATTGATCAAAAAACGCAGACGCTCTCGTTAA 807 0.4498 MKIQCDVCHKVEASVFCPADEAALCHACDGTIHRASKLAGKHTRFCLHQPNSKDSPLCDICQKRRAYIFCREDRAILCRECDLPIHGVNEHTQKHDRFLLTGSKLGSSSESTSLSSEDRAASSEVRTSRSNANNNYMASDTGSVSTSSISEYLIGTIPGYCMEDLLDASFAPNGFCKDYEHQSVFQDRNIQVGMCSFPWEAWSPQSQVVRSPELSTSNNLPQLDDSSSIGVKEMPRTSTAEGYSNWGYNGYPVPSVSPPLIKKRRRSR* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3199 268 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Dod03g3199 268 CDD Bbox1_BBX-like 5 45 - -
Dod03g3199 268 SMART bboxneu5 4 47 IPR000315 GO:0008270
Dod03g3199 268 SMART bboxneu5 53 100 IPR000315 GO:0008270
Dod03g3199 268 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 265 - -
Dod03g3199 268 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Dod03g3199 268 MobiDBLite consensus disorder prediction 210 245 - -
Dod03g3199 268 CDD Bbox1_BBX-like 57 100 - -
Dod03g3199 268 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 265 - -
Dod03g3199 268 MobiDBLite consensus disorder prediction 210 268 - -
Dod03g3199 268 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Dod03g3199 268 Gene3D Classic Zinc Finger 1 99 - -
Dod03g3199 268 MobiDBLite consensus disorder prediction 105 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3199 Dod-Chr3 64579500 64581257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3199 1 185 C2C2-CO-like Transcription Factor Family AT1G75540 44.860 1.17e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod03g3199 zf-B_box 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3199 - - gmx:100790232 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g3199 03 64579500 64581257 Dod03g3199 03 64579500 64581257 ECH
Dod03g3199 03 64579500 64581257 Dod02g0493 02 6439872 6443003 ECH