Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3195 ATGAATATGTCTACTATGCAAGGCCAAGAAATAGTAGTGAAGAGTTCAAAGTGTCAAGACTGTGGGAACCAAGCAAAGAAGGATTGTGCATACTCAAGGTGCAGAACTTGCTGCAAGAACAAAGGGTTTCAGTGCCACACCCATGTCAGAAGCACTTGGATCCCTGTTGATAGAAGGCGCCAGAGAGTGCTGGATCAGCAACCATCTCCCACTACTTCTAATCTAAACCTTCTTCAGGGAGATGATATCCCTAAAAGGCACAAGCACAACCCATATTCATCAGAGGAGTTGGAGTTTCCAGCTGCTATGAGTTCGGTGGCGATATTCAACTGCGTTCGGGTGCGCTCTATGGATGATGCGGTTAACGAAATCGCCTATCAAACATCTGTGAACATTGGAGGACATGTATTTAGTGGTCTTCTTTATGATCAAGGCCCTGATCAACAAAGCTCCAATAATAATGCTAGTAGGCCTAGGGGTGACAGCTCCACACACACTCTTGTTCATCAACAACACAATCTCAATCTTATGATGAGTGACGGTGCAACTATGCCTTCACTACCAGCCACTACTGCTCCTGCTGCTCATGAACGCTTTTTCCCCTTACCTTCCTTCAGGCCCGGTATGCCATATTTTTCACAGTACCCAAAACCTTAA 657 0.4551 MNMSTMQGQEIVVKSSKCQDCGNQAKKDCAYSRCRTCCKNKGFQCHTHVRSTWIPVDRRRQRVLDQQPSPTTSNLNLLQGDDIPKRHKHNPYSSEELEFPAAMSSVAIFNCVRVRSMDDAVNEIAYQTSVNIGGHVFSGLLYDQGPDQQSSNNNASRPRGDSSTHTLVHQQHNLNLMMSDGATMPSLPATTAPAAHERFFPLPSFRPGMPYFSQYPKP* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3195 218 MobiDBLite consensus disorder prediction 143 166 - -
Dod03g3195 218 MobiDBLite consensus disorder prediction 64 91 - -
Dod03g3195 218 MobiDBLite consensus disorder prediction 65 79 - -
Dod03g3195 218 PANTHER BNAC01G23660D PROTEIN 5 201 - -
Dod03g3195 218 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 17 59 IPR006510 -
Dod03g3195 218 Pfam Domain of unknown function (DUF702) 15 147 - -
Dod03g3195 218 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 5 201 IPR007818 GO:0003700|GO:0006355
Dod03g3195 218 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 99 146 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3195 Dod-Chr3 64539503 64541196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3195 18 143 C2H2 Transcription Factor Family AT3G51060 51.773 1.82e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Dod03g3195 DUF702 1e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3195 - - gsj:114376985 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g3195 03 64539503 64541196 Dod03g3195 03 64539503 64541196 ECH
Dod08g2232 08 50074886 50077190 Dod03g3195 03 64539503 64541196 ECH
Dod03g3195 03 64539503 64541196 Dod08g2232 08 50074886 50077190 ECH