Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3194 ATGGCTTCCGACTCTTTCAACAACGGTCCTTCATCTCCCGATGATTCCCTTTCCAGCCCAATCGGCAACACCTTCTCCTCCCCAGGTGATGCCACTCGCCGGAGGCGACGCCGCCGCTCCACCACTCCTTCCGCATTCGGTACCCCGCCGGCGCACAGGTCCCGATTCGCCTCCGACGCCACCCCCACTCCATCGCGCTCCCGGCAGAGATCCGGCGGAGGAGGCGGCGGCGGCGGTGGCCGCGTTCCCATCACTCCGACTTCCACCGACGACTTTCAGCCGTCTTCGGAAGGCGGTGACGGCTTCGACATGGAGGACGCAAGGCCTACCTTCGTTTGGGGAACAAACATAAGCGTGGAAGACGTGAACGACGCGATTCAGAGGTTCCTTAGGGATTTCAGAGACGCTTCGTCGCAGAGCAATGATGACTTGCTGCACTTGCACACCGAAGGGAAGTACGAGAAGCTTATCAAACAGGTGATTGAAGTTGAAGGGGATTCTCTTGACGTTGATGCGCGTGACGTATTCGATCACGACCCTGATTTGTACACGAAGATGGTTAGGTACCCGCTCGAGGTGCTTGCGATTTTCGATTTGGTTTTGATGAATATGGTTAGCAGGATTAAGCCTATGTTCGAGAAGCATATTCAGACTCGGATTTTCAATCTCAAATCCTCTACTTCAATGAGGAATTTGAACCCTTCTGATATTGAGAGGATGGTGTCGTTGAAGGGTATGATTATAAGGTGTAGCTCAATCATACCTGAAATAAGGGAAGCTATATTTAGGTGTCTTGTTTGTGGATACTGCACTGACCCTGTTGCTGTAGAGAGAGGACGAATTACTGAACCTACTATATGCTTGAGGGAAGAGTGTCAGTCCAGGAACTCCATGACACTGGTTCACAACCGATGCAGGTTTACTGATAAGCAAATTGTGAGGCTCCAGGAGACACCTGATGAGATACCTGAAGGAGGGACACCTCACACAGTCAGCTTGCTGATGCATGACAAGCTGGTGGATGCTGGAAAGCCGGGTGATAGAGTTGAGGTGACTGGTATTTATCGGGCTATGAGTGTCAGGGTTGGACCAACTCAGAGAACTGTTAAATCATTGTTCAAGACGTATATAGACTGTCTTCACATAAAGAAGACTGACAAGTCAAGGATGCTGGTTGAGGACGCTATGGAGGTTGATAATGGGTCTGGCAGAAATGTAGAAGAAGTTCATTTTGATGAAGAAAAGGTGGCTCAACTGAAGGAGCTCTCAAAAGAGCCAGATATATATGAAAGGTTGACAAAGTCCTTGGCACCAAACATCTGGGAGCTAGACGATGTGAAGAAAGGTCTTCTTTGTCAGCTGTTTGGAGGCAATGCTTTGAAGTTGGCATCTGGTGCTAGCTTCCGTGGTGATATAAATATTCTTCTTGTCGGTGATCCTGGTACGAGCAAGTCCCAGCTTCTTCAATACATTCACAAACTATCTCCTCGGGGCATTTACACTAGCGGAAGGGGGAGTTCTGCTGTTGGATTGACTGCTTACGTGACCAAGGACCCTGAAACGGGGGAAACCGTTCTTGAGAGTGGTGCCCTAGTTTTGAGTGACCGAGGTATTTGCTGTATAGATGAATTCGACAAAATGTCTGACAGTGCAAGGAGCATGTTGCATGAGGTGATGGAACAACAAACCGTTTCCATAGCAAAGGCAGGTATTATTGCTTCCCTCAATGCTAGGACTTCAGTATTGGCTTGTGCGAATCCAAGTGGGTCACGATATAATCCTCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACTCTTCTTTCCAGGTTTGATTTAATTTACTTAATTCTTGACAAGGCTGATGAACAGACTGATCGACGACTTGCCAAACATATTGTTTCCTTACACTTTGATAATCCCGAGAGCTTGGAGCAAGATGTGCTGGACCTATCTACATTAACTGATTACGTAAGTTATGCCCGAAAGTACATACACCCTCAGCTGTCTGATGAAGCTGCTGAAGAATTGACTAGAGGTTATGTTGAAATAAGAAAAAGAGGAAATTTCCCTGGGAGCACCAAAAAGGTGATAACAGCAACACCAAGGCAGATTGAGAGTCTGATACGCCTTAGTGAAGCATTGGCTAGGATTCGCTTTTCAGAATGGGTTGAAAAGCGTGATGTAATGGAGGCATTCCGGCTTCTGGAAGTTGCAATGCAACAGTCTGCAACGGATCACTCTACTGGAACTATTGACATGGATCTTATTACTACTGGAGTTTCGGCAAGTGAAAGGATGAGACGAGAGAGTCTACTACAAGCAACCCGCAACATAATCATGGAGAAGTTGCAAATTGGGGGACCATCCATGCGGGTATTGGAGTTATTGGAAGAGTTGAGGAAACAGAACACAGGCAGTGAAGTTCATCTTAATGATCTAAGGAATGCAGTTTCTACTCTCGCTAGCGAAGGATTTGTTGCCGTGCATGGTGACAGCGTAAAGAGATCATGA 2517 0.4744 MASDSFNNGPSSPDDSLSSPIGNTFSSPGDATRRRRRRRSTTPSAFGTPPAHRSRFASDATPTPSRSRQRSGGGGGGGGGRVPITPTSTDDFQPSSEGGDGFDMEDARPTFVWGTNISVEDVNDAIQRFLRDFRDASSQSNDDLLHLHTEGKYEKLIKQVIEVEGDSLDVDARDVFDHDPDLYTKMVRYPLEVLAIFDLVLMNMVSRIKPMFEKHIQTRIFNLKSSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGYCTDPVAVERGRITEPTICLREECQSRNSMTLVHNRCRFTDKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKSRMLVEDAMEVDNGSGRNVEEVHFDEEKVAQLKELSKEPDIYERLTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDSARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFDNPESLEQDVLDLSTLTDYVSYARKYIHPQLSDEAAEELTRGYVEIRKRGNFPGSTKKVITATPRQIESLIRLSEALARIRFSEWVEKRDVMEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESLLQATRNIIMEKLQIGGPSMRVLELLEELRKQNTGSEVHLNDLRNAVSTLASEGFVAVHGDSVKRS* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3194 838 ProSiteProfiles MCM family domain profile. 428 634 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dod03g3194 838 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 80 837 IPR031327 GO:0003677|GO:0005524|GO:0032508
Dod03g3194 838 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 439 754 IPR027417 -
Dod03g3194 838 Pfam MCM AAA-lid domain 654 740 IPR041562 -
Dod03g3194 838 PRINTS Mini-chromosome maintenance (MCM) protein family signature 529 543 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dod03g3194 838 PRINTS Mini-chromosome maintenance (MCM) protein family signature 557 570 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dod03g3194 838 PRINTS Mini-chromosome maintenance (MCM) protein family signature 469 484 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dod03g3194 838 PRINTS Mini-chromosome maintenance (MCM) protein family signature 581 593 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dod03g3194 838 PRINTS Mini-chromosome maintenance (MCM) protein family signature 608 616 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dod03g3194 838 Pfam MCM P-loop domain 416 638 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dod03g3194 838 Gene3D - 229 368 IPR012340 -
Dod03g3194 838 CDD MCM4 431 740 - -
Dod03g3194 838 SMART mcm 225 742 IPR031327 GO:0003677|GO:0005524|GO:0032508
Dod03g3194 838 MobiDBLite consensus disorder prediction 1 107 - -
Dod03g3194 838 Gene3D - 747 831 IPR036388 -
Dod03g3194 838 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 80 837 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Dod03g3194 838 Gene3D - 256 308 - -
Dod03g3194 838 SMART AAA_5 470 620 IPR003593 -
Dod03g3194 838 Gene3D - 116 223 - -
Dod03g3194 838 Pfam MCM N-terminal domain 125 222 IPR027925 -
Dod03g3194 838 SUPERFAMILY Nucleic acid-binding proteins 147 379 IPR012340 -
Dod03g3194 838 Gene3D - 406 746 IPR027417 -
Dod03g3194 838 Pfam MCM OB domain 229 358 IPR033762 -
Dod03g3194 838 Coils Coil 798 818 - -
Dod03g3194 838 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 444 455 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Dod03g3194 838 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 742 751 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Dod03g3194 838 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 302 314 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Dod03g3194 838 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 590 607 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Dod03g3194 838 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 251 264 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Dod03g3194 838 ProSitePatterns MCM family signature. 537 545 IPR018525 GO:0003677|GO:0005524|GO:0006260
Dod03g3194 838 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3194 Dod-Chr3 64528949 64534704 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3194 1 837 Core DNA Replication Machinery Family AT2G16440 74.736 0.0 1265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3194 K02212 - gmx:100782586 1437.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g3194 03 64528949 64534704 Dod03g3194 03 64528949 64534704 ECH