Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3153 ATGTTGCACTGTGTTAACACTTCGGGGAATCTAGGAGGGAGCTGTTCCGACACGACAGTGTTGGAGAGGCAAAGGGCAAGGAGAAAGTGGCAACAACAAGGACAGAGCAACCACCACCTCCAGCAGGAGGAGGAGCAGCAACAAGGCTTGTTCTGTGGAACAGGGTATAATGATAATGGGTTCTGTTCTCCTTCTTCTTCTTCTTCTTCTCCCCTGCAAGTTCAGAATAATCCTCAGGGGATGATGATGAGGATGAGGATGATGGACGGTGGTGATTCCTCTGCGCTTTGTCTCTCGGTGAAACCCGACTCGGGAAAGGTTGACAACCTGGCATTCAGGTCATCTTCTTTTTCCGCAGTTTCAAGGACTTGTAGCAGTCCACGTGGCAGAGAATTATTGGTCTCATCCACAGAGAAAACGAGAGAGAGCGCTACGAAGAGGAAGGCTGAGAATCCAAAGGTTGTTCCAGAAAATGATGGGAAGGATAAGAGGGTAAAAGTGAGTGGTGGTGGTGGTGAAGAAGAAGAATCATCAAAAGTAACGGAGCAAAACAACAGCAACATTAACAAGAAGAATGCGAAATCAAGCACTAGCAAAAGCAACAAGGAAACAACATCTGTGGAAACTTGCAAGGAGAATTCAAAAGGGTCGGAGGTTCAGAATCAGAAGCCTGACTACATTCATGTCCGAGCACGTCGTGGCCAAGCAACTGATAGTCATAGCCTAGCTGAAAGGGTTAGGAGGGAAAAGATTAGTGAGAGAATGAAGTATTTGCAAGATTTGGTGCCGGGTTGTAACAAAATTACAGGAAAAGCTGGAATGCTAGATGAAATCATTAACTACGTTCAGTCCCTTCAAAGACAAGTTGAGTTCTTGTCCATGAAATTAGCTGCTGTAAACCCAAGGCTAGACTTCAACATTGATGATCTCTTTGCCAAAGAGGTGTTTCCTACTTGTGCTCCAAGTTTTCCAACCATAGGGATGCCATCAGAGATGACTTCTAACCCTGCGGCATATCTTGACTTCAACTCAGCACAACAACTTGTTTCGTGTTGTGGTGGATTAATCAACAACATGGGGATGAACCCTTCCGAGATGGGGCTTCGAAGGAGCATTAGTACTCCTGTGTCTTTCCCAGAAACGTTTCCTGACTCATCACCTTGTTTCGCTCAAATGTTACCCTCCTCCTCAACTTGGGAAGGTGATTTCCAAGTCCAAAACCTTTACAATGTGGCTTTTGATGGAGTGAGAACATCAACTTTTCCTTCTCAGCCGTTCACGGACTTGTTGGACAGTCCACGATCAGCCTTAGTATAG 1317 0.4563 MLHCVNTSGNLGGSCSDTTVLERQRARRKWQQQGQSNHHLQQEEEQQQGLFCGTGYNDNGFCSPSSSSSSPLQVQNNPQGMMMRMRMMDGGDSSALCLSVKPDSGKVDNLAFRSSSFSAVSRTCSSPRGRELLVSSTEKTRESATKRKAENPKVVPENDGKDKRVKVSGGGGEEEESSKVTEQNNSNINKKNAKSSTSKSNKETTSVETCKENSKGSEVQNQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDDLFAKEVFPTCAPSFPTIGMPSEMTSNPAAYLDFNSAQQLVSCCGGLINNMGMNPSEMGLRRSISTPVSFPETFPDSSPCFAQMLPSSSTWEGDFQVQNLYNVAFDGVRTSTFPSQPFTDLLDSPRSALV* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3153 438 CDD bHLH_AtBPE_like 225 310 - -
Dod03g3153 438 MobiDBLite consensus disorder prediction 181 204 - -
Dod03g3153 438 MobiDBLite consensus disorder prediction 26 46 - -
Dod03g3153 438 Gene3D - 232 306 IPR036638 GO:0046983
Dod03g3153 438 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 233 304 IPR036638 GO:0046983
Dod03g3153 438 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 235 285 IPR011598 GO:0046983
Dod03g3153 438 MobiDBLite consensus disorder prediction 30 46 - -
Dod03g3153 438 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 16 419 - -
Dod03g3153 438 MobiDBLite consensus disorder prediction 116 133 - -
Dod03g3153 438 MobiDBLite consensus disorder prediction 134 180 - -
Dod03g3153 438 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 419 IPR024097 GO:0006355
Dod03g3153 438 SMART finulus 241 291 IPR011598 GO:0046983
Dod03g3153 438 Pfam Helix-loop-helix DNA-binding domain 239 286 IPR011598 GO:0046983
Dod03g3153 438 MobiDBLite consensus disorder prediction 116 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3153 Dod-Chr3 64171776 64174132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3153 174 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 57.812 2.87e-59 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod03g3153 HLH 2.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3153 - - gmx:100794256 431.409