Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3149 ATGGCTGCCGCAGATGTTGAGTTCCGATGCTTCGTTGGTGGGCTCGCCTGGGCCACCGACAACGAAGCCCTCGAGAAGGCCTTCTCTTCCTATGGCGAGATCGTTGAATCGAAGGTTATCAACGATCGCGAAACTGGTAGATCCAGAGGTTTCGGATTCGTGACCTTTGCATCGGAGCAATCGATGAGGGACGCGATCGACGGCATGAATGGCCAGAACCTTGACGGCCGTAACATCACCGTGAACGAGGCTCAGTCCCGTGGCGGAGGCGGAGGAGGAGGAAGAAGCGGTGGCGGCGGATACGGAAGCGGTGGCGGATACAGCCGCGGTGGTGGTGGATATGGTGGTGGTGGCCGTCGTGAAGGTGGATACAGCAGGAGCGGCGGTGGCGGTGGCGGTGGCTACGGTGGAGGTGGTTATGGTGGCGGAAGGGACCGTGGCTACGGTGACGGTGGATCCCGCTACTCCAGGGGTGGCGGTGACGGTGACGGAAGCTGGAGAAACTGA 507 0.6114 MAAADVEFRCFVGGLAWATDNEALEKAFSSYGEIVESKVINDRETGRSRGFGFVTFASEQSMRDAIDGMNGQNLDGRNITVNEAQSRGGGGGGGRSGGGGYGSGGGYSRGGGGYGGGGRREGGYSRSGGGGGGGYGGGGYGGGRDRGYGDGGSRYSRGGGDGDGSWRN* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3149 168 Gene3D - 2 104 IPR012677 -
Dod03g3149 168 PANTHER GEO13361P1-RELATED 1 168 - -
Dod03g3149 168 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Dod03g3149 168 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Dod03g3149 168 SMART rrm1_1 9 82 IPR000504 GO:0003723
Dod03g3149 168 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 168 - -
Dod03g3149 168 MobiDBLite consensus disorder prediction 68 168 - -
Dod03g3149 168 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3149 Dod-Chr3 64128859 64130206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3149 10 87 Eukaryotic Initiation Factors Gene Family AT1G22760 32.051 6.58e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3149 - K13195 lja:Lj1g3v2296520.2 160.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g3149 03 64128859 64130206 Dod03g3149 03 64128859 64130206 ECH