Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3112 ATGGAAGATTACGCGAGCAGCGACGAGGATTGCCATTACTCCGATCAGGAAGATTCCCTCGACGCCTTCGAGAACGACGACAACGATTTCCAATTGGTCCCTTCCAGGCCTCCCTCTACTCAGGTGATTACGAAGACATCGCTGCTGGCTGCACAGAAAGACGATTTGCGCAGAGTGATGGACATGCTTTCAGTGAGGGAGCAACATGCGCGTACCCTGCTTATTTATCATCGTTGGGATGTGGAGAAGCTATGTGCGGTGTATGTCGACAGGGGAAAACAACATCTCTTTGCTGAAGCTGGTGTTACTGTGGATGAACATCGTGACTCATCATCAGTTCCTTCTTCAGTATTTTGTGAAATCTGCATTGAGGATGTTCCTAGTGATGAGGCAACAAGAATGGACTGTGGTCACTGTTTTTGCAACGGCTGTTGGACAGAGCATTTTTTTGTCAAGATAAACGAGGGTCAAAGTAAACGCATCAGATGCATGGCACACAAATGCTATTCCATATGTGACGAAGCTGTTGTAAGAACTCTACTCGGCAGAAAGCACCCTGATATGGCAGAGAAATATGAACGCTTTCTTCTTGAATCCTATATTGAGGACAATAAGAGAGTTAAATGGTGTCCTAGCACGCCTCATTGTGGGAATGCGATACGTGTGGAAGATGATGAATTATGTGAGGTAGAATGTTCATGTGGTCTACAATTTTGTTTTAGCTGTTTGTCAGAAGCACACTCCCCTTGTTCATGTAAGATGTGGGAGCTTTGGGCCAAGAAGTGTCGAGATGAATCAGAAACTGTAAATTGGATAACAGTTCATACAAAACCTTGTCCAAAGTGCCACAAACCGGTGGAGAAAAATGGTGGTTGTAACTTAGTTAGCTGTATCTGTGGCCAAGCATTTTGTTGGTTGTGTGGTGGAGCCACTGGCCGAGAGCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGCTACAAAGACCAAGAAAAAACAGCTGAACGGGCAAAGCGGGATCTGTATCGTTATATGCATTATCATAACCGTTATAAAGCTCACACAGACTCCTTTAAGCTTGAAAGTAAACTGAAAGAGAAAATACAGGGGAAGATTGCTGTTTCAGAAGAAAAAGATTCTACACTTAGAGATTATAGTTGGGTAAATAATGGGCTGTCTAGGCTTTTCAGGTCTAGGCGTGTCCTATCATATTCATATGCATTTGCATTTTACATGTTTGGAGATGAGCTTTTTAAGGACGAAATGGAAGAATCTCAAAGGGAAATAAAGCAGAACTTATTTGAGGATCAACAGCAGCAGCTTGAGGCAAATGTTGAAAAGCTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTTGCAGATGATAAGTCATGGAGATAA 1404 0.4302 MEDYASSDEDCHYSDQEDSLDAFENDDNDFQLVPSRPPSTQVITKTSLLAAQKDDLRRVMDMLSVREQHARTLLIYHRWDVEKLCAVYVDRGKQHLFAEAGVTVDEHRDSSSVPSSVFCEICIEDVPSDEATRMDCGHCFCNGCWTEHFFVKINEGQSKRIRCMAHKCYSICDEAVVRTLLGRKHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGLQFCFSCLSEAHSPCSCKMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKDQEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKEKIQGKIAVSEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKDEMEESQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFADDKSWR* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3112 467 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 5 450 IPR031127 GO:0004842|GO:0016567
Dod03g3112 467 SUPERFAMILY RING/U-box 116 202 - -
Dod03g3112 467 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 5 450 - -
Dod03g3112 467 SUPERFAMILY RING/U-box 260 317 - -
Dod03g3112 467 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Dod03g3112 467 MobiDBLite consensus disorder prediction 1 38 - -
Dod03g3112 467 Pfam Ariadne domain 329 464 IPR045840 -
Dod03g3112 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 206 IPR013083 -
Dod03g3112 467 SUPERFAMILY RING/U-box 190 258 - -
Dod03g3112 467 SMART ibrneu5 190 252 IPR002867 -
Dod03g3112 467 SMART ibrneu5 260 325 IPR002867 -
Dod03g3112 467 Pfam IBR domain, a half RING-finger domain 190 252 IPR002867 -
Dod03g3112 467 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Dod03g3112 467 Gene3D - 248 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3112 Dod-Chr3 63686818 63689481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3112 60 464 ARIADNE family AT2G16090 74.390 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3112 K11968 - gmx:100783343 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g3112 03 63686818 63689481 Dod03g3112 03 63686818 63689481 ECH