Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3095 ATGAATATGATGATGCCACCTTCTCAGCCACCCTTCAACCACTGGGCCCATCACCACCTCATCTCCATCTCCATCTCCGTCACCTCTCCATCTCCAACCCCTGTGGTCAACAAGTCAACGCTACAATCTCCACCGCCGTCAAAATTGCCGGTGGACTTCAGCCCTCCGTTGATAGCAATGGTGGTTGTCGTCGCCGCTGCCTTCCTCATCGTCACCTACTCCCGCCTCATCTCCCGCCACCTCACTCCCCCAATCCACCGCCTCATCCGCCGCATACGGCGTCGCCGCCGCCGCGCACGCTCCCTTCTTCCCTCCTCCTCCGGCGACCTCGACTCCCTCCCTTACTACGACTCCCCCTTCGATGGAAACCTCCAAACGTCATCGTTCTCACCTTACGGCCTCGACGACTCCGTCATCAAGACCATCCCCTTCTCCCTCTACGCCGCCGCCTACGACGGAAACAACTCCTCGCGCTCCTCCTCCTCCTCTCGCCGTGACTGCGCCGTTTGCCTCTTCGGATTTGAGGACGACGATTATGTCAGAACCCTACCAATCTGCTCTCACACCTTCCACGTTGATTGCATCGATGCGTGGCTCCGTTCGCACGCGAACTGCCCTCTCTGCCGCGCCGGGGTTCTCTCCGCCGCGTCGCCGTTCACACCCATGTTCGCAGCCAGGATCCGCCCCAGCCTCGACGACGACGACGCCGCAATCTTCCACCGAATCACGGAGGATCGTCATCTTGTTCCGGCTGAGGATCGCAATGCTCCGGCGGTGGAGATCACGGTTGAGGTGCCGCAACCGCTGGAGGAGAGGTTCAACGGGAGGGACTTTTTGTTGAAGAGGTCTTATTCGTTCGGGTTCGAGAGGAGCTCGGCGTCGGAGAGGATGATGGTGATGGAGCCGGCGACGGCGTCGCCGTGGCGGTACCGGAGGGGTGGTAGCAGCAGCAGCTTCTGGAGCAAGAGGCCTTCGCCGTTTGGGTCCATAGGGAAATCGAGGGTGTTCTCTTTCAGATACTATAGAGGGATGAAGTCGCCGTTTTTTCGCCGGAGAGGGTTTTTTCCGTTGTCGGAGTCGAGCATGAGGTACGGCGGCGGCGGAAGCTCGTCGCGGCGGAGCAAGTCTATTGCTAGTCCCATGTTTTTGAAGTCGTCGGTTTTGTCTTCCACGGCGGCGGGTGCGGCCGCGTTCTCGTCGAGTAGGCTGAGGTGCGGCGATCCTGAGGCGTTGCTGTCGCCGGAGAGGTTCAACCGAAGATGA 1263 0.6017 MNMMMPPSQPPFNHWAHHHLISISISVTSPSPTPVVNKSTLQSPPPSKLPVDFSPPLIAMVVVVAAAFLIVTYSRLISRHLTPPIHRLIRRIRRRRRRARSLLPSSSGDLDSLPYYDSPFDGNLQTSSFSPYGLDDSVIKTIPFSLYAAAYDGNNSSRSSSSSRRDCAVCLFGFEDDDYVRTLPICSHTFHVDCIDAWLRSHANCPLCRAGVLSAASPFTPMFAARIRPSLDDDDAAIFHRITEDRHLVPAEDRNAPAVEITVEVPQPLEERFNGRDFLLKRSYSFGFERSSASERMMVMEPATASPWRYRRGGSSSSFWSKRPSPFGSIGKSRVFSFRYYRGMKSPFFRRRGFFPLSESSMRYGGGGSSSRRSKSIASPMFLKSSVLSSTAAGAAAFSSSRLRCGDPEALLSPERFNRR* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3095 420 Pfam Ring finger domain 166 209 IPR001841 -
Dod03g3095 420 CDD RING-H2_PA-TM-RING 166 209 - -
Dod03g3095 420 ProSiteProfiles Zinc finger RING-type profile. 167 209 IPR001841 -
Dod03g3095 420 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 32 388 - -
Dod03g3095 420 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 32 388 IPR044675 -
Dod03g3095 420 SMART ring_2 167 208 IPR001841 -
Dod03g3095 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 213 IPR013083 -
Dod03g3095 420 SUPERFAMILY RING/U-box 166 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3095 Dod-Chr3 63594420 63596927 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3095 50 420 C3H Transcription Factor Family AT3G18930 54.293 5.62e-104 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3095 - K19041 gmx:100795347 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g3095 03 63594420 63596927 Dod03g3095 03 63594420 63596927 ECH