Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3080 ATGGAAGGATTAATTGGCATGACATACAAGACTCTTAGACTTTCGAAGTTTGAACAACACAATCTCTTTATTTGGCCTTTACTCTATCATCAGTTCAAAGACACACAAGCAAAGCGAACTCAGATGACTACTGTAGCCAAACCACCTTCCTTCTTCAAAGTTTTCTTTCCAGAGCGCAGCTCCAAAAGACTGCTAATACCAAATGCTTTTGTGGCATTGACACCCTTGGGAGAAAGGGTGCCTCGAGAATTCATCCTTAGAAATGGAAGAGGGAGAGATTGGAAGGTTAAGACAAGTTGCATCGGAGAGCGAGTATTTTTTGATGATGGTTGGGAGCGGTTTGTGGAACAGAATGCTTTACAGCATGCAGACTTCATTGTTTTCCAATATGATGGAAGCAATTTGTTTAAGTTCAACATCTATGAACTATCATCATGCTGTGAAAAGCCGGAGGTCAATGAGGAGGAGGTAGAACATGAAGAAGAAATTAATGATGGTGTGATGAGAATGGGAACCGAGAAGGAGGAAGAGTCAAAAGAAAAAGAAGGAGACAACTGTGTGATGGAGGAGGATGAAGATGAAGGTGGTGATGATGATGAAGATGATGATGACAATGATTATGAAGAAGGTGATGATGAGGATGATGGTGATGATGAGGATGATGATGATGATGGCGAGGAGGAGGAGGAGCATGCAGTGATTGATCATGCTAGAGCCGGCAAAGCTTTTGTTATCAGCAAAAAGGGCACTACTGGAAGTTCTGGCTCCAAGGCTGATGATCTTAATGAGTATGGAACTATTGCAGCAAAGCATTTATCTCATCCAGACAATCCATACTTTATTGCAAAACAAGTCAAAGACAGAAAGAACGAATTGCAAATTCCAAATAATATCATTAAAGATTTCTCCCTCAGCATGCCAGAAACTCTTACTATGAGGTGTCAGTATATTACTGTCAGCTCACAAGAAATTATCACCATCCGCAAGAATCGTTTTCCTGATGCAGGAAAAATACGTACATGGAAAGATGGTCGTGTGTTCATTATCGGGTGGTCATCATTTTGCAGGAAGAACAAGATTGAAGCTAATGATACATGCATCTGTGAAATGGTGTTGAGGGAAGACCTGAAAGTAGAAATGTTACAGGTGCATGTTGTTAGGCGACAACTTTAG 1173 0.4084 MEGLIGMTYKTLRLSKFEQHNLFIWPLLYHQFKDTQAKRTQMTTVAKPPSFFKVFFPERSSKRLLIPNAFVALTPLGERVPREFILRNGRGRDWKVKTSCIGERVFFDDGWERFVEQNALQHADFIVFQYDGSNLFKFNIYELSSCCEKPEVNEEEVEHEEEINDGVMRMGTEKEEESKEKEGDNCVMEEDEDEGGDDDEDDDDNDYEEGDDEDDGDDEDDDDDGEEEEEHAVIDHARAGKAFVISKKGTTGSSGSKADDLNEYGTIAAKHLSHPDNPYFIAKQVKDRKNELQIPNNIIKDFSLSMPETLTMRCQYITVSSQEIITIRKNRFPDAGKIRTWKDGRVFIIGWSSFCRKNKIEANDTCICEMVLREDLKVEMLQVHVVRRQL* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3080 390 CDD B3_DNA 49 141 IPR003340 GO:0003677
Dod03g3080 390 ProSiteProfiles B3 DNA-binding domain profile. 49 144 IPR003340 GO:0003677
Dod03g3080 390 SUPERFAMILY DNA-binding pseudobarrel domain 47 146 IPR015300 -
Dod03g3080 390 MobiDBLite consensus disorder prediction 162 185 - -
Dod03g3080 390 Gene3D - 263 389 IPR015300 -
Dod03g3080 390 Pfam B3 DNA binding domain 51 138 IPR003340 GO:0003677
Dod03g3080 390 Gene3D - 42 146 IPR015300 -
Dod03g3080 390 SUPERFAMILY DNA-binding pseudobarrel domain 273 386 IPR015300 -
Dod03g3080 390 PANTHER B3 DOMAIN-CONTAINING 46 388 - -
Dod03g3080 390 MobiDBLite consensus disorder prediction 152 239 - -
Dod03g3080 390 MobiDBLite consensus disorder prediction 186 230 - -
Dod03g3080 390 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 46 388 - -
Dod03g3080 390 SMART B3_2 280 389 IPR003340 GO:0003677
Dod03g3080 390 SMART B3_2 51 144 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3080 51 386 B3 DNA Binding Superfamily AT5G60140 25.220 4.09e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod03g3080 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3080 - - ahf:112736814 233.417