Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3079 ATGATCTCACAGAGGATTCCAAAGAAGTTAGTTAAAAGATATAGGGATAAACTTCCTGCTGTTGCTACTCTTGTTCTCCCCTGTGGTGATGATTGGTTAGTCAGATTGACAGTAGTTGATGACAAATTGTGGTTCACTGATGGCTGGCATGAATTTGTGGTCCGCTACTCTATTTGTGTGGGATGTCTTCTTCTCTTCAAATATGAGGGAGACTCAATTTTCAAAGTCAGCATATTCAATTTGAAATCTTGTGAGGTAGATTACATAGATGGCCCTAAAGCTGCAGGAAAAGAAAAGGAATTCTCAGTTTCAAATGGAAAAGAAACTGAAAATAATTCTTTCCCTTCTTTTGCCATAAAAAAGAATGTTCCTGACGGAGGTCTAGATCAAAAGATACTTTGTGGAAATTGCAATGACATCCTGAAGTCCATGAGTAATATTGATAGCAATAACATGTTTCTAACCAAGGAAGCAGATAAGTGCCAAGACAGACCCCAATCAATGAGAGATGTTGGTATTCAGTTCAATGGAATTGAGATTGATGGAGTGATTCATTTGCCTAACCAGGCAGACATCAAGCAAACAAAAAGAAGAAAACAAAGAAATGAGCCTTCCAATCTTGTCAAAGAAATGGAAATGCCAAGAAGTAAAATTCCAAGGATGGAGAGTGATGCGAGCAATGTGTCAACTCCAGAAAGAGAGAGAACGATTCAATCAGCTGAGAAGTTTAAGCCTAGCAATCCACATTGCAGAATTGTCATGAGACGTTCCTTCATTTCAAACAAGTGTTTGCATATACCCACTGAGTTTTCATCAAAATATCTAAATGAGATTTCAGAGTTTATAACACTTGAAGATTCCAATGGAAAGCAATGGCCTGTTCGATGCATTATTCATCGGAATGCAAAGAAACTAAGCCAGGGCTGGTCCCACTTTGTGAGGGATAACAATTTAGAGGAAGGAGATGTTTGTGTATTTGAACTTATGGAGAAGAAGAAAGTTGTGCTCAAGGTTACCATATTTCGGGTTTCTTCACACTTGTTAACTAGTGAAACCAAACTTCAAAGTGATGTTCAAGCATGA 1083 0.3804 MISQRIPKKLVKRYRDKLPAVATLVLPCGDDWLVRLTVVDDKLWFTDGWHEFVVRYSICVGCLLLFKYEGDSIFKVSIFNLKSCEVDYIDGPKAAGKEKEFSVSNGKETENNSFPSFAIKKNVPDGGLDQKILCGNCNDILKSMSNIDSNNMFLTKEADKCQDRPQSMRDVGIQFNGIEIDGVIHLPNQADIKQTKRRKQRNEPSNLVKEMEMPRSKIPRMESDASNVSTPERERTIQSAEKFKPSNPHCRIVMRRSFISNKCLHIPTEFSSKYLNEISEFITLEDSNGKQWPVRCIIHRNAKKLSQGWSHFVRDNNLEEGDVCVFELMEKKKVVLKVTIFRVSSHLLTSETKLQSDVQA* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3079 360 PANTHER B3 DOMAIN-CONTAINING 5 343 - -
Dod03g3079 360 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 5 343 - -
Dod03g3079 360 SUPERFAMILY DNA-binding pseudobarrel domain 243 344 IPR015300 -
Dod03g3079 360 Pfam B3 DNA binding domain 253 343 IPR003340 GO:0003677
Dod03g3079 360 ProSiteProfiles B3 DNA-binding domain profile. 249 344 IPR003340 GO:0003677
Dod03g3079 360 SUPERFAMILY DNA-binding pseudobarrel domain 5 84 IPR015300 -
Dod03g3079 360 MobiDBLite consensus disorder prediction 192 219 - -
Dod03g3079 360 MobiDBLite consensus disorder prediction 192 236 - -
Dod03g3079 360 Gene3D - 2 84 IPR015300 -
Dod03g3079 360 CDD B3_DNA 248 342 IPR003340 GO:0003677
Dod03g3079 360 SMART B3_2 250 344 IPR003340 GO:0003677
Dod03g3079 360 SMART B3_2 2 82 IPR003340 GO:0003677
Dod03g3079 360 CDD B3_DNA 5 80 IPR003340 GO:0003677
Dod03g3079 360 ProSiteProfiles B3 DNA-binding domain profile. 1 82 IPR003340 GO:0003677
Dod03g3079 360 Gene3D - 228 346 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3079 Dod-Chr3 63470262 63472715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3079 5 347 B3 DNA Binding Superfamily AT3G18990 33.894 2.43e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod03g3079 B3 3.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3079 - - vvi:100264028 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g3079 03 63470262 63472715 Dod03g3079 03 63470262 63472715 ECH