Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3078 ATGCCGCGCCCTTCTTTCCACAAGCTTGTTCTTCCCGCTACCATCCAATCAAGACAACTGAGGATTCCAGATGGTTTTCTGAGGAAATATGGGGGTGAGCTTTCTCCAGTTGCTACCCTCTCTGTTCCTGATGGAAGTGTCTGGCGTATTGGATTAAAAAGGACAGACAGCAGATTCTGGTTTGTTGATGGATGGCCAGAATTTGTTCAACGCTACTCCATCGGCGTTGGATACTTGCTAGTATTCAGATACGAACGAAAGTCATCCTTCACTGTTCACATCTTTAATTTGGCTACTGCTGAGATAAACTATCAATCAGCCATGCGAAGCAGTAATGAAGGGGCTTACTTTGCGAATTGTCTAAAAATTTTTGATGAAATGGAGGATGAAGATTCCATCGAATTATTGGATTCATCACCTTCCCATCTTACTCCAGGTGCATTACAAAACAAAGTGATCCAGGTCAAGAATTATAATACTCCTCCATCATTGCAGAATCTATTTAATGGGTCTAAACTAAACAATGTGAACTGGGGAGATGGTGGGAAAGCCCTTTCTTCAAGAAGTGCCCATTCACTAGACAATCAGTTTACCAGAGATATAGGTGTTCAGTTTAATGCAGTTGAGTTCAAAAAGTCTACCGATGAATTGAAATTGCGCGCATCTATGGATGAAAAGGTTAAGAAAACTGGAAGAAAGAAGCGAAAATCAGAAGCCCAGGAAACCTCTGATGAACATGAAGAGGAGTCAGAAATGCGCATTAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACAGCGGAGGAAAGAGAAAAGGCTGTCAATGCGGCAAAAGAATTTGAACCATCCAATCCTTTCTGCAGAGTCGTCCTGAGGCCCTCCTATTTATATAGGGGATGCATAATGTATTTGCCATCGTGCTTTGCAGAGAAGCATTTGAATGGGGTTTCGGGATTCATTAAACTTCAAACCTCTGACGGGAGACAGTGGCCTGTTCGCTGCCTCTATAGATCAGGTAGAGCTAAGTTAAGCCAGGGGTGGTTTGAATTCTCAATAGATAACAATTTAGGAGAAGGTGATGTGTGCGTGTTTGAGCTGCTTCGAATGAAGGAAGTAGTGCTGCAAGTTACTATATTTCGTGTCACTGAGGAAGAGGGATTGTTGAGCCCTCCTTTGCCGCAGAACCAACCAGTGAGCCAAGCTAGACTGTTGAGAACTCCTACGCAGCAGCATCACCTCACCACATCAAAACTGATTAGGAATTAG 1272 0.4292 MPRPSFHKLVLPATIQSRQLRIPDGFLRKYGGELSPVATLSVPDGSVWRIGLKRTDSRFWFVDGWPEFVQRYSIGVGYLLVFRYERKSSFTVHIFNLATAEINYQSAMRSSNEGAYFANCLKIFDEMEDEDSIELLDSSPSHLTPGALQNKVIQVKNYNTPPSLQNLFNGSKLNNVNWGDGGKALSSRSAHSLDNQFTRDIGVQFNAVEFKKSTDELKLRASMDEKVKKTGRKKRKSEAQETSDEHEEESEMRIRFYESASARKRTVTAEEREKAVNAAKEFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQTSDGRQWPVRCLYRSGRAKLSQGWFEFSIDNNLGEGDVCVFELLRMKEVVLQVTIFRVTEEEGLLSPPLPQNQPVSQARLLRTPTQQHHLTTSKLIRN* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3078 423 ProSiteProfiles B3 DNA-binding domain profile. 289 384 IPR003340 GO:0003677
Dod03g3078 423 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 412 - -
Dod03g3078 423 Gene3D - 266 386 IPR015300 -
Dod03g3078 423 PANTHER B3 DOMAIN-CONTAINING 1 412 - -
Dod03g3078 423 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Dod03g3078 423 SMART B3_2 6 98 IPR003340 GO:0003677
Dod03g3078 423 SMART B3_2 289 384 IPR003340 GO:0003677
Dod03g3078 423 Gene3D - 1 98 IPR015300 -
Dod03g3078 423 MobiDBLite consensus disorder prediction 234 252 - -
Dod03g3078 423 CDD B3_DNA 287 382 IPR003340 GO:0003677
Dod03g3078 423 SUPERFAMILY DNA-binding pseudobarrel domain 282 383 IPR015300 -
Dod03g3078 423 CDD B3_DNA 4 96 IPR003340 GO:0003677
Dod03g3078 423 Pfam B3 DNA binding domain 11 96 IPR003340 GO:0003677
Dod03g3078 423 Pfam B3 DNA binding domain 292 383 IPR003340 GO:0003677
Dod03g3078 423 MobiDBLite consensus disorder prediction 224 252 - -
Dod03g3078 423 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3078 Dod-Chr3 63459063 63468556 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3078 1 385 B3 DNA Binding Superfamily AT3G18990 49.096 3.96e-128 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod03g3078 B3 1.6e-17 CL0405