Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3077 ATGGATGAGCAGCAAGGCAAGCCTTCCTTCTTCACAATCATCAAGGAAGGCCAAAACACCCAGCACCTGAGAGTTCCACCTAAGTTTCTGAAGCATTTGGACAAAGACTTGTTGAGTAATGATGCAACTCTTATGTGTCCTTATGGTGACCAATGGCGAGTGACTCTTATCAAGAGGGGAAATGATGACATATATATGCACCATGGTTGGCCAAAGTTTCTGATAGAAAACTTAGTTATGCCGGATGACTTCTTGGTTTTCACATATGATGGAAAGACCTGTTTCCAGGTCCAAATATTTAGGAAAAGTGGAATTGATAGGCCATACTATAGAAAAGGAAAAAAGTTAGAAGCTGATGCCCCAATGATCAGGGCAGAAAAGGGTACACAGATACAAACTTCTGCTGGTTCCTCACACCTTCTTGAATCAAAGCCTTCTCAAGAAGAACTGGCTCTTGGGAACAAAGGCTCACTTCCTAAGGGCTACCCTTCAGTGCCTCAGAATTCAACTAAAATTGACAGGTCAAATGATTGCAACTTGGTCGAGTCTTTTACCTCCAGCGATCCTTGTTTCAAGCACCTCATCAAGAAAAGTAATGTCACAGACAAAGGGTGCTTTTTGCCTGTTGCTACTGAGTTTGCCAGGGAGTATCTTTCTCCTGCTGTAAAAGAGATCACCGTTCAGAATTCCTTTGGAATATGTTGGGAAATGGGAGTGGCTTGCTATTGCATTCAAGGAAGGAGTTATTATCGGTTTTCAAGAGGATGGTCAACATTTGTACGTGATAACAAGCTCAAGATAGGTGACACTTGCATATTTGAACTTAAAGGTGGAAAAAACATGAGGGTTCACATATTCAAATGTGCACCAAATTAG 876 0.4167 MDEQQGKPSFFTIIKEGQNTQHLRVPPKFLKHLDKDLLSNDATLMCPYGDQWRVTLIKRGNDDIYMHHGWPKFLIENLVMPDDFLVFTYDGKTCFQVQIFRKSGIDRPYYRKGKKLEADAPMIRAEKGTQIQTSAGSSHLLESKPSQEELALGNKGSLPKGYPSVPQNSTKIDRSNDCNLVESFTSSDPCFKHLIKKSNVTDKGCFLPVATEFAREYLSPAVKEITVQNSFGICWEMGVACYCIQGRSYYRFSRGWSTFVRDNKLKIGDTCIFELKGGKNMRVHIFKCAPN* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3077 291 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 5 103 - -
Dod03g3077 291 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 140 288 - -
Dod03g3077 291 ProSiteProfiles B3 DNA-binding domain profile. 192 289 IPR003340 GO:0003677
Dod03g3077 291 SMART B3_2 191 289 IPR003340 GO:0003677
Dod03g3077 291 SMART B3_2 10 103 IPR003340 GO:0003677
Dod03g3077 291 SUPERFAMILY DNA-binding pseudobarrel domain 5 104 IPR015300 -
Dod03g3077 291 SUPERFAMILY DNA-binding pseudobarrel domain 187 286 IPR015300 -
Dod03g3077 291 Pfam B3 DNA binding domain 19 102 IPR003340 GO:0003677
Dod03g3077 291 Pfam B3 DNA binding domain 192 287 IPR003340 GO:0003677
Dod03g3077 291 Gene3D - 170 289 IPR015300 -
Dod03g3077 291 ProSiteProfiles B3 DNA-binding domain profile. 8 103 IPR003340 GO:0003677
Dod03g3077 291 CDD B3_DNA 189 287 IPR003340 GO:0003677
Dod03g3077 291 CDD B3_DNA 8 101 IPR003340 GO:0003677
Dod03g3077 291 Gene3D - 2 104 IPR015300 -
Dod03g3077 291 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 103 IPR044837 -
Dod03g3077 291 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 140 288 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3077 Dod-Chr3 63443466 63447272 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3077 21 275 B3 DNA Binding Superfamily AT3G18990 25.240 1.43e-17 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod03g3077 B3 4.5e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3077 - - aprc:113865156 268.47