Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3061 ATGGAACACCCCTTTTCGCCTAAGGGAAAGGGAATTGGGTATTGGACGTCTCCTCGGGCTCAATTGGAGGGATCAACATCGTTAGATGGTGGAGTGAAGAATTCAATGTCAGAGGATATGCTTAACAACCTCTCGGAGCTAATGAACTTTGATACTTATGCTGGTTGGTGCGATAGCCCATCTATGAATGATCATAGTTTGGGTAATGGGCTTTCATCATTTGCCTCAGTACCATATCCACCACCTGATGGGTTCAATCCTGCAAAACAGGGCAGCGATCCCTTCTTTGTGACTGAAGATAGTGGAAATTACAATGCCATGGAGAACTCCTCTGGTTATGGAGATAAAGTTGTATTACAACAAATGGACACGCAACTTGGCATGTCAGATGATGCAAATGATACAAATAACATAAACTTGACACACAAAATTAGTGGCTCGCTTCAACAATTTAATACTTCAGACATGGGCAAATACATGATCCCCAGGCCATCTTCTTGGTCACTTGATGAGAGAATGCTGAGGGCTTTGTCGTTCTTTAAGGAATCAGCTGGTGGGGGAATATTGGCACAAGTTTGGGTACCCCAGAAACATGGCGATGAATTCATCTTAAGCACAAGTGAGCAGCCTTATTTGCTAGATCAAACGCTTGCTGGGTATCGTGAAGTGTCAAGGACATTTACATTTTCTGCCGAGGGAAAATCGGGTTCTTTCCCTGGGCTTCCTGGTCGTGTGTTTATCTCCCATGTTCCTGAATGGACCTCCAATGTTGGTTACTACAATAAAAGTGAGTACTTGAGGGTGGAGCATGCAATTAATCACGCAGTTCGCGGATCAATTGCCCTTCCCATAACAGATCAGAACTCTGAACTACCATGTTGTGCTGTACTAGAACTTGTCACTACCAAGGAAAAGCCTGATTTTGACAGAGAATTAGAAATTGTTAGTAATGCGCTCCAGCTTGTTAATTTAAAGACTACTACACCTCCACGGCTGCTTTCCCAGTCTCTGTCAAATAACAAAAGAGCTGCTTTAACGGAGATAATTGATGTGTTACGAGCTGTTTGTCATGCGCACAAATTGCCACTGGCATTGACATGGATCCCCTGTTATTATAGTGAGGGAACAAGAGATGAAACTGCGAGATTACAAATTAAAGAGGGGCATACAGGTTGCAATGAAAAATGTGTACTATGCATTCAAGAATCAGCTTGCTATATTAATGATAGAACGGTAGGGGGATTTGTCCATGCATGTGTTGAACGTCATCTTGAGGAAGGGCAAGGCATAGCTGGGAAAGCTCTTCAATCAAATCATCCATTCTTCTATCCTGATGTGAGGGCATATGATATTAGTGAATATCCCCTTGTTCAGCATGCACGCAAATACAATTTGAATGCTGCTGTTGCAATTAGGCTAAGGAGTACCTATACTAATGATGATGATTACATATTAGAATTCTTTCTGCCTTTCAATATGAGAGGGAGTCAAGAACAGCAACTTTTATTAGACAATCTCTCAGGGACGATGCAGAGGATTTGTAGGAGTTTGAGGACAGTTTCAGATGCTGAACTATCAGGAATAGAAGCCTCACATGTGGGGTTTCAAAAGGAAAAAGTCTTAAGTTTTTTCCCTATGTCTTGGGGAAACACTCATATAGGATTAAATGACGATGGTGATTCAGTTCAGATGATGTCCTTGACGGCATCTAACCTGAGAAATAATGAAATTGAAACTGCTCATAACCAGGAATTAGGTGGACCAAGAAGGCAGGTTGAGAAAAAGAGAAGTACAGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAGCAATACTTTTCTGGTAGTCTGAAGGATGCAGCAAAAAGCATTGGTGTTTGCCCAACAACTCTGAAAAGGATATGCAGGCAACATGGAATTTCAAGATGGCCATCCCGCAAGATTAATAAAGTGAACCGTTCATTAAAAAAAATAAAGACTGTGCTTGACTCAGTCCAGGGAGTGGAAGGAGGGTTGAAGTTTGATCCTTACACCGGGGGGTTTGTTGCTGGAGGGTCAATCATCCAAGAAATTGATGTGCACACAAGTCTTCTCTTCCCTGAGCCCAATACAAGTTCCGCAAAAGACCATGAGCATGTAATGCAAGCCACAGTCACAGTATCTGCAGCACCTGGTAGCAAAGTTGATAACTTAGCGGTTAAATTGGAGGATGACGATGATTTTTGTTTGGTGGGAACCCAGCTCTTGCGTTCAAGTGTGCTCATCTCTAATTCCGAAGGAGAGTTGAAGCAAGACAAACCACCTTCTGTTGATTTTAGTGAGGAATCAAAATCAATAGCCACCATATTGGGTGTGAGCAAGAGTAGTTTGGGAGTAGAAAATTCTAGCCGCGATATTGCTGGTTACAGTCCATGCTCACTGATTGCTGATGAGGTGGAAATTGGTGCCGATGCAGCTGATGGGGCTGTTGACCATAACCACCATACTTCTTCAAGCATGACAGACTCATCCAACGGCTGTGGTTCAACTATGCACCACAGCTCATCTGGCTCTCAGAGCTTTGAGAACCAGAAACACTCCAAAGCCAAATCACCTTGTGTTGATAGTGGATCAAAACTTACTGTCAAAGCTTCCTACAAAGAAGACACTATTCGTTTCAAGTTTGATCCATCAGCGGGTTGTTTCCAGCTGTATGAAGAAGTTGCAACAAGATTCAAATTACAGAACGGGTCATTCCAGCTCAAATATCTTGATGACGAAGATGAATGGGTGATGATGGTAAACGACTCAGATTGGCAGGAATGTATAGAAGTATTGGATGATCTTGGCACGCGTAGTGTTAAGTTTCTTGTCCGTGACATGCCTACCGGTTTAAGCAGCCGCGGCAGTAACAGTTGCTTCATGGCAGACAGTTCATAG 2916 0.4283 MEHPFSPKGKGIGYWTSPRAQLEGSTSLDGGVKNSMSEDMLNNLSELMNFDTYAGWCDSPSMNDHSLGNGLSSFASVPYPPPDGFNPAKQGSDPFFVTEDSGNYNAMENSSGYGDKVVLQQMDTQLGMSDDANDTNNINLTHKISGSLQQFNTSDMGKYMIPRPSSWSLDERMLRALSFFKESAGGGILAQVWVPQKHGDEFILSTSEQPYLLDQTLAGYREVSRTFTFSAEGKSGSFPGLPGRVFISHVPEWTSNVGYYNKSEYLRVEHAINHAVRGSIALPITDQNSELPCCAVLELVTTKEKPDFDRELEIVSNALQLVNLKTTTPPRLLSQSLSNNKRAALTEIIDVLRAVCHAHKLPLALTWIPCYYSEGTRDETARLQIKEGHTGCNEKCVLCIQESACYINDRTVGGFVHACVERHLEEGQGIAGKALQSNHPFFYPDVRAYDISEYPLVQHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPFNMRGSQEQQLLLDNLSGTMQRICRSLRTVSDAELSGIEASHVGFQKEKVLSFFPMSWGNTHIGLNDDGDSVQMMSLTASNLRNNEIETAHNQELGGPRRQVEKKRSTVEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIKTVLDSVQGVEGGLKFDPYTGGFVAGGSIIQEIDVHTSLLFPEPNTSSAKDHEHVMQATVTVSAAPGSKVDNLAVKLEDDDDFCLVGTQLLRSSVLISNSEGELKQDKPPSVDFSEESKSIATILGVSKSSLGVENSSRDIAGYSPCSLIADEVEIGADAADGAVDHNHHTSSSMTDSSNGCGSTMHHSSSGSQSFENQKHSKAKSPCVDSGSKLTVKASYKEDTIRFKFDPSAGCFQLYEEVATRFKLQNGSFQLKYLDDEDEWVMMVNDSDWQECIEVLDDLGTRSVKFLVRDMPTGLSSRGSNSCFMADSS* 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3061 971 MobiDBLite consensus disorder prediction 824 863 - -
Dod03g3061 971 ProSiteProfiles RWP-RK domain profile. 583 670 IPR003035 -
Dod03g3061 971 Coils Coil 971 971 - -
Dod03g3061 971 CDD PB1_NLP 872 952 IPR034891 -
Dod03g3061 971 Pfam RWP-RK domain 602 650 IPR003035 -
Dod03g3061 971 PANTHER PROTEIN NLP8 5 968 IPR045012 GO:0003700
Dod03g3061 971 Pfam PB1 domain 872 952 IPR000270 GO:0005515
Dod03g3061 971 ProSiteProfiles PB1 domain profile. 871 953 IPR000270 GO:0005515
Dod03g3061 971 Gene3D - 868 951 - -
Dod03g3061 971 SMART PB1_new 871 953 IPR000270 GO:0005515
Dod03g3061 971 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 968 - -
Dod03g3061 971 MobiDBLite consensus disorder prediction 822 868 - -
Dod03g3061 971 SUPERFAMILY CAD & PB1 domains 865 954 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3061 Dod-Chr3 63340026 63346287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3061 1 968 NLP Transcription Factor Family AT2G43500 49.798 0.0 844
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Dod03g3061 PB1 3.4e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3061 - - aprc:113864503 1388.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1844 10 39882832 39888944 Dod03g3061 03 63340026 63346287 PCT