Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3054 ATGCACCACGGAAACCACCCCCAAAACTATAGTCACACATCCACAAGCCGTTCTTCATCAGATTCTGGTGAATCTTGTGATGATGAAGGTAAATGGGCCTCAAAGCTTCTTAGGGAGTGTGCCAGAGCAATCAGTGATAGGGACTCAGTCAAAATCCACCACCTTCTATGGATGTTAAACGAGCTTGCTTCACCCTATGGAGATTTTGAGCAGAAACTAGCCTCTTGCTTCTTGCAAGCACTATTCTGCAAGGCCACACAATCTGGCCAAAGGTGCTACAACACTCTAACATCGGTGGCTGAGAGAATTAGCCACTCCTTTGATTCGCAAAGGAAGTTAATGCTCAAGTTTCAAGAGGTAAGCCCTTGGACAACTTTTGGACACGTGGCTTCAAATGCTGCCATTTTGGAAGCCTTAGAAGGAGAGAATAAACTCCACATAATTGACATAAGCAACAACACCCTTTGCACTCAGTGGCCTACTTTGTTGGAAGCATTGGCTACTAGGAACAATAATAATGTTGAATCTCCTCAATTGAAGCTCACAATTGTAGAGGTAAAAGACAGCATAGCAGGGTCAGTGGTGAAGGAAGTTGGTAAGAGAATGGAGAAGTTTGCTAGGCTAATGGGAGTGTCCTTTGAGCTCAAGGTGATTGATGGGGTGGATCATCTAGGAGAGATCACAAGAGAAGGGTTAGGAGTTGAAGAAGATGAGGCTATTGCAGTGAATTGTGTTGGGGCGTTGAGAAGAGTGGAAGAGGAAGAGAGGGGAATTGTGATTAACATGTTCAAGTCTCTTGGTCCAAGAGTGGTGACAATTGTTGAGGAAGAGGCTGATTTTTGCAGCACAAGAAATGACTTTGTGAAGTGCTTTGAAGAGTGCCTAAGGTTTTACACCCTTTACTATGAGATGCTAGAGGAAAGCTTTACCACAATAAGCAATGAGAAGTTGATGCTAGAGAGGGGGTGCTCAAGAAGCATAGTTACTGTTTTGGGTTGCAATAATATTAGTAGTGATGATGAATTTGGAGGAGATTGTTGCAATTGTTGTGAGAGAAGGGAGAGAGGAATTCAGTGGTGTGGGAGGTTTAAGGAGGAGGGTTTTGCATCATTTGGTTTCAGTGATGATGTTTTGGATGATGTGAGGGCATTGCTCAAGAGGTACCGTTCAGGGTGGTCACTCATGGTGGTGCCACCGCAAGGAGATGAACATCTCTCTGGAGTTTACTTGACATGGAAGGATGAGCCAGTAGTTTGGGCTTCAGCTTGGAAACCCTCTACATCAAGCTGA 1290 0.4442 MHHGNHPQNYSHTSTSRSSSDSGESCDDEGKWASKLLRECARAISDRDSVKIHHLLWMLNELASPYGDFEQKLASCFLQALFCKATQSGQRCYNTLTSVAERISHSFDSQRKLMLKFQEVSPWTTFGHVASNAAILEALEGENKLHIIDISNNTLCTQWPTLLEALATRNNNNVESPQLKLTIVEVKDSIAGSVVKEVGKRMEKFARLMGVSFELKVIDGVDHLGEITREGLGVEEDEAIAVNCVGALRRVEEEERGIVINMFKSLGPRVVTIVEEEADFCSTRNDFVKCFEECLRFYTLYYEMLEESFTTISNEKLMLERGCSRSIVTVLGCNNISSDDEFGGDCCNCCERRERGIQWCGRFKEEGFASFGFSDDVLDDVRALLKRYRSGWSLMVVPPQGDEHLSGVYLTWKDEPVVWASAWKPSTSS* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3054 429 ProSiteProfiles GRAS family profile. 24 424 IPR005202 -
Dod03g3054 429 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 7 424 IPR005202 -
Dod03g3054 429 Pfam GRAS domain family 35 424 IPR005202 -
Dod03g3054 429 PANTHER PROTEIN SHORT-ROOT-LIKE 7 424 - -
Dod03g3054 429 MobiDBLite consensus disorder prediction 7 21 - -
Dod03g3054 429 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3054 Dod-Chr3 63288183 63290065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3054 3 426 GRAS Transcription Factor Family AT4G37650 47.836 6.65e-134 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dod03g3054 GRAS 4e-83 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3054 - - vvi:100854487 581.637